Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4526
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...   155   4e-39
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...   100   2e-22
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    66   4e-12
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   2.3  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.3  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.0  
SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C |Schizosacchar...    26   4.0  
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S...    26   4.0  
SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3 |Schizosacchar...    25   7.1  
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    25   7.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.1  

>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  155 bits (377), Expect = 4e-39
 Identities = 68/114 (59%), Positives = 91/114 (79%)
 Frame = +1

Query: 247 LDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINF 426
           L+ +   IK  + KKI  + GAGIST+AGIPDFRSPETG+Y+NLQ++ LP  +A+F++++
Sbjct: 15  LEKVASLIKEGKVKKICVMVGAGISTAAGIPDFRSPETGIYNNLQRFNLPYAEAVFDLSY 74

Query: 427 FRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAG 588
           FR+NP+PF+ LA EL P  ++PT +HYFIRLLH+K LL + YTQNIDTLER AG
Sbjct: 75  FRKNPRPFYELAHELMPEKYRPTYTHYFIRLLHDKRLLQKCYTQNIDTLERLAG 128



 Score = 28.7 bits (61), Expect = 0.76
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 590 IPEEKLVEAHGTFYTSHCL 646
           +P++ L+EAHG+F  S C+
Sbjct: 129 VPDKALIEAHGSFQYSRCI 147


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score =  100 bits (240), Expect = 2e-22
 Identities = 53/121 (43%), Positives = 77/121 (63%)
 Frame = +1

Query: 244 SLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEIN 423
           + + +V  +K  + K ++ L GAGISTS GI DFRS + G Y  L ++ L +P  +F+I+
Sbjct: 145 TFEDVVNLLK--KAKNVVVLVGAGISTSLGILDFRS-DNGFYARLARHGLSEPSEMFDIH 201

Query: 424 FFRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAGHSRRK 603
            FR+NP+ F+T A++L P +   + SH FIRLL +K  L   +TQNID LE+  G S  K
Sbjct: 202 TFRENPEIFYTFARDLLPETNHYSPSHAFIRLLEKKNKLSTLFTQNIDNLEKKTGLSDNK 261

Query: 604 I 606
           I
Sbjct: 262 I 262


>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 66.1 bits (154), Expect = 4e-12
 Identities = 45/120 (37%), Positives = 73/120 (60%), Gaps = 6/120 (5%)
 Frame = +1

Query: 235 DEVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQ-KYELP-QPQA 408
           + V L  +V  I+  + K+I+ ++GAGIS  AGIPDFRS E GL+ +L+ +Y+L    + 
Sbjct: 43  ENVDLSPLVSAIR--KAKRIVVVTGAGISCDAGIPDFRSSE-GLFSSLRAEYKLNCSGKE 99

Query: 409 IFEINFFR--QNPKPFFTLAKEL--FPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLE 576
           +F+ + +R  ++   F  + ++L     + +PT  H F+  L ++  LLR YTQNID LE
Sbjct: 100 LFDGSVYRDLKSVNIFHAMIRKLHMLSNNARPTDFHLFLSQLAQESKLLRLYTQNIDFLE 159


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +3

Query: 375  LTEVRTTSTTGDIRNKFLQAKSQTFLHISKGIISRKL*AYNFTLFHK 515
            LT +      GD+ N+ LQ   + F +++KG   +    +NF+ F K
Sbjct: 4237 LTSLDLARVDGDVANQLLQTIDKIFSNLTKGSFEKL--TFNFSNFVK 4281


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +1

Query: 295 ITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPKPF 450
           + L  A +  + G+P  R P     H  + Y LP+     EI+FF QNP+ F
Sbjct: 407 VNLPAAQLQVAMGLPLSRIP-----HIRELYGLPR-DGDSEIDFFFQNPESF 452


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = +1

Query: 73  MSHRRMSRQQLRWKASEICFAISTWHDVR-MYLALKLG--LFSP 195
           +   + SR++ ++ A+E+C A+  +HD   +Y  LKL   L SP
Sbjct: 775 IQQEQFSRRRAQFYAAEVCLALKYFHDNGIIYRDLKLDNILLSP 818


>SPAC17G8.14c |pck1|SPAC22H10.01c|protein kinase C
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 988

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +1

Query: 232 LDEVSL--DGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQK 384
           LD + L  DG +R      CK+ + L G   ST  G P+F +PE  L     K
Sbjct: 792 LDNILLCPDGHIRIADYGLCKENMLL-GNTTSTFCGTPEFMAPEILLEQQYSK 843


>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
           Vps33|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 422 ISSGKIPNLSSH*QRNYFQEALSLQFHIIS 511
           I +G    L  H + NYFQ+ L LQ  ++S
Sbjct: 336 IHTGLAETLVQHTKNNYFQKLLQLQHLLVS 365


>SPAC6F12.05c |tnr3||thiamine diphosphokinase Tnr3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 445 PFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLER 579
           P   +  EL   SFKP  +   +  L   G++   + Q + TLER
Sbjct: 253 PLNQVLHELELKSFKPNCALVLLDFLIRHGIITPQHPQYLQTLER 297


>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +1

Query: 334 IPDFRSPETGLYHNLQKYELPQP-QAIF 414
           +PDFR  + GL H  Q   LP+   AIF
Sbjct: 809 MPDFRGGDRGLSHKHQNIPLPKTCAAIF 836


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +3

Query: 57  GHETVDESPQNVPPTTSMESLRNMFRD 137
           G    DE P ++PP      + N +RD
Sbjct: 18  GRRRFDEKPDSLPPLPDANGMSNGYRD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,913,153
Number of Sequences: 5004
Number of extensions: 63443
Number of successful extensions: 155
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)