Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4526
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0509 - 4029739-4029890,4031064-4031208,4031665-4031709,403... 49 4e-06
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 31 0.78
12_01_0909 - 8828921-8829004,8829204-8829249,8829798-8829919,883... 31 1.0
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 30 1.8
07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470 29 4.2
11_05_0090 + 18979316-18981070 28 5.5
10_01_0336 + 3707065-3707174,3707183-3708185 28 7.3
08_02_0368 - 16312961-16314588,16314794-16314890,16316360-163164... 28 7.3
01_06_0551 + 30159789-30159946,30160509-30160629,30160714-301607... 28 7.3
06_03_0918 + 25937605-25937907 27 9.7
>12_01_0509 -
4029739-4029890,4031064-4031208,4031665-4031709,
4031800-4031899,4032013-4032140,4032548-4032712,
4033033-4033162,4033252-4033412,4034306-4034351,
4034429-4034494,4034579-4034664,4035811-4035849
Length = 420
Score = 48.8 bits (111), Expect = 4e-06
Identities = 37/114 (32%), Positives = 58/114 (50%)
Frame = +1
Query: 247 LDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINF 426
+D + R+I D+ KK++ L+GAG+ST +GIPD+RSP G Y + K L + + I
Sbjct: 32 VDLLYRFI--DQSKKLMVLTGAGMSTESGIPDYRSP-NGAYSSGFK-PLTHQEFVRSIRA 87
Query: 427 FRQNPKPFFTLAKELFPGSFKPTISHYFIRLLHEKGLLLRHYTQNIDTLERGAG 588
R+ + + +P +HY + L G + TQN+D L AG
Sbjct: 88 RRRYWARSYAGWRRF--RRAQPNSAHYALASLERIGRVHSMVTQNVDRLHHRAG 139
>07_01_0077 +
566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 31.1 bits (67), Expect = 0.78
Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = +3
Query: 270 QER*VQEDHNTFRSWYFYLC-WNSRLP*SRNRIIS*LTEVRTTSTTGDIRN 419
QE Q+D N F W FYLC W P S+ +II L ++T D N
Sbjct: 649 QEGGPQDDGNLFTRW-FYLCMWYKDDPHSQEKIIYYLARLKTKDILRDSGN 698
>12_01_0909 -
8828921-8829004,8829204-8829249,8829798-8829919,
8830013-8830078,8830520-8830771,8830859-8830939,
8831193-8831294,8831373-8831410,8831497-8831602,
8831694-8831816,8831918-8831994,8833095-8833240,
8833355-8833533
Length = 473
Score = 30.7 bits (66), Expect = 1.0
Identities = 22/88 (25%), Positives = 40/88 (45%)
Frame = +1
Query: 265 WIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPK 444
W K + + +G G+S S D+ + + + + L Q ++ F NP
Sbjct: 132 WSKVSSVIYLDSPAGVGLSYSKNTSDYNTGDLKTAADSHTFLLKQWFQLYPE--FLSNP- 188
Query: 445 PFFTLAKELFPGSFKPTISHYFIRLLHE 528
F +A E + G + PT+SH ++ LH+
Sbjct: 189 --FYIAGESYAGVYVPTLSHEVVKGLHD 214
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +1
Query: 295 ITLSGAGISTSAGIPDFRSPETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTLAKELF 474
+ GA I + D R P+ ++ N ++Y+LP+P I + N P+ KE+F
Sbjct: 265 MAFQGADIDIRV-VRDGRGPDCNIWSNFEQYKLPEPLCILRAD---NNVPPWRPGLKEVF 320
>07_03_1487 - 26911652-26911989,26912114-26912201,26912559-26913470
Length = 445
Score = 28.7 bits (61), Expect = 4.2
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Frame = +1
Query: 178 LGLFSPQDLEPAE-PPEKVLDEVSLDGIVRWIKS-DRCKKIITLSGAGISTSAGIPDFRS 351
+G+ + +++ E P + V+ DG+ ++ S D + LS G+ ++ +P
Sbjct: 265 VGVIAEPEVKSVEITPAHLFFVVASDGVFEFLSSQDVVDMCVNLSAFGLYEASDVP---- 320
Query: 352 PETGLYHNLQKYELPQ---PQAIFEINFFRQNPKPFFTLAKELFPGSFK 489
TG+ L K P + +++ Q P TLA LF GS K
Sbjct: 321 -RTGVAAKLMKCLNENGISPASTSKLDVHSQKPNQSMTLAYVLFRGSMK 368
>11_05_0090 + 18979316-18981070
Length = 584
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Frame = -2
Query: 360 CFGTTEVWNSSRGRN---TSS*KCYDLLAPIALDPPDNTIKADFIQNFFGWF 214
C+G TE+ ++ R R+ T + + L++P A PPD+T+ A +F F
Sbjct: 269 CYGATEI-DAPRLRSFKYTGFARRFSLVSPAAAPPPDDTVVARAELHFLDHF 319
>10_01_0336 + 3707065-3707174,3707183-3708185
Length = 370
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Frame = +1
Query: 238 EVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFRSPETGLYH----NLQKYELPQP 402
EVS DG V W+ + I L G I +A + R+ + G+ N + LPQP
Sbjct: 293 EVSADGAVDWVHTQNALVSIPLPGVLIGAAASLLFVRTEDGGIVSVQVGNGRFQMLPQP 351
>08_02_0368 -
16312961-16314588,16314794-16314890,16316360-16316489,
16316605-16316657
Length = 635
Score = 27.9 bits (59), Expect = 7.3
Identities = 19/66 (28%), Positives = 27/66 (40%)
Frame = +1
Query: 91 SRQQLRWKASEICFAISTWHDVRMYLALKLGLFSPQDLEPAEPPEKVLDEVSLDGIVRWI 270
S+ LRW + C+ + + DV M P+D E E E D + L + RW
Sbjct: 223 SKDFLRWLLLDGCYILVRFGDVVMRRR-------PEDEEVEEEEETTADGIVLRRVRRWF 275
Query: 271 KSDRCK 288
CK
Sbjct: 276 HVPSCK 281
>01_06_0551 +
30159789-30159946,30160509-30160629,30160714-30160788,
30160877-30161028,30161103-30161208,30161298-30161363,
30161623-30161694,30161849-30161932,30162108-30162206,
30162841-30162888,30162986-30163039,30163137-30163235,
30163321-30163410,30163503-30163580,30163699-30163773,
30163866-30163956,30164282-30164410,30164501-30164589
Length = 561
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = +1
Query: 355 ETGLYHNLQKYELPQPQAIFEINFFRQNPKPFFTL----AKELFPGSFKPTI 498
E + HN+++Y+LP + + ++ N + F+ L +EL P + PT+
Sbjct: 94 ERKIMHNIRQYQLPLQKYMAMMDLQEGNERLFYKLLIDNVEELLPVVYTPTV 145
>06_03_0918 + 25937605-25937907
Length = 100
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 523 HEKGLLLRHYTQNIDTLERGAGHSRRKI 606
HE+GL LR Y+++ E+G HS R +
Sbjct: 9 HEEGLALRLYSRDFLPKEQGQHHSYRSL 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,808,438
Number of Sequences: 37544
Number of extensions: 402421
Number of successful extensions: 995
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -