Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4526
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.3  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   3.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.7  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 73  MSHRRMSRQQLRWKASEICFAISTWHDVRMYLALKL 180
           +SH R +R+        +     TWHD+R+ L  +L
Sbjct: 132 ISHYRRTRRDRYTNLGLVNEQGQTWHDLRVALTSEL 167


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 589 GRLLALMCQCFVYNDVIRALSHVE 518
           G+L+ L C     ND+++ +  VE
Sbjct: 56  GKLVPLQCDLSNQNDILKVIEWVE 79


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = +1

Query: 217 PPEKVLDEVSLDGIVRWIKSDRCKKIITLSGAGISTSAGIPDFR 348
           P ++ L  + ++     ++  R K    L   GIS    +P FR
Sbjct: 146 PMDRQLCHIEIESFGYTMRDIRYKWNAGLQSVGISNEVELPQFR 189


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 527  RKGSYYVIIHKTLTH 571
            R GSYY + H TL +
Sbjct: 1064 RAGSYYGVPHSTLEY 1078


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,406
Number of Sequences: 438
Number of extensions: 4380
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)