Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4525
         (498 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    27   1.2  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    26   2.7  
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom...    25   6.3  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   6.3  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   8.4  

>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 486 IKIDFLPWQNIIDKGIL*IFHVIQTFGLNIWQPNSPISIQSAHLSI 349
           +KI    +Q  +   I  I+HVI T+G  +++    +   +AH S+
Sbjct: 131 MKIFSFTFQTALPISIAIIWHVISTYGFALYRQRIVVGKHAAHFSL 176


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -1

Query: 471 LPWQNIIDKGIL*IFHVIQTFGLNIWQPNSPISIQSAHLSIKTNK 337
           L W+  +DK +  I   ++  G+  W P + +    A  SI T K
Sbjct: 69  LAWEKSLDKPMGVIAGSLEDGGIGFWDPAAILKSDEASASIATYK 113


>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 992

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 385 IGLPYIQSKSLYNVKNL*YSLINDI 459
           +GL     +SL  ++NL YS+ ND+
Sbjct: 376 VGLEGASEESLAKIENLVYSIFNDL 400


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 404 NPKVCIT*KIYNIPL 448
           NPKV +T K+ NIPL
Sbjct: 128 NPKVVVTFKVTNIPL 142


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = -1

Query: 414 TFGLNIWQPNSPISIQSAHLSIKTNKEL 331
           + G ++  P+S IS++SA  +++TN+ L
Sbjct: 710 SLGPSVIHPSSFISLESAQANLQTNEAL 737


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,928,893
Number of Sequences: 5004
Number of extensions: 35513
Number of successful extensions: 90
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)