Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4524
         (720 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator Dap1|Sch...    27   3.6  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    27   3.6  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   8.2  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    25   8.2  

>SPAC25B8.01 |dap1|SPAC26H5.15|cytochrome P450 regulator
           Dap1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 166

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/21 (57%), Positives = 16/21 (76%)
 Frame = +1

Query: 286 IFV*LDITPWRRTNKKNVIAS 348
           +F+ L IT WRR N+K+ IAS
Sbjct: 12  LFLYLLITRWRRKNEKSFIAS 32


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 601 FLSQSVLFCILLLQNNVDFTSARGPVRLIFFSVVAIF 491
           FL   +++ I LLQ+N  F S   P+R IF  ++  F
Sbjct: 65  FLILGMIYTISLLQSNFLFFSGITPIRAIFDFILTGF 101


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = -1

Query: 708 GYRSPMDFSNARGRAKPLVPLKTNF*KL--TF*HDIFSSYHNLFFSAYYFY 562
           G RS +  +N R      V  K N  KL     H  FS  HN FF +Y+ Y
Sbjct: 340 GKRSSLSLANFRFHT---VEPKNNIAKLYDPRLHLFFSLRHNSFFESYFIY 387


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 336 VFFVCSSPWGNIKLHKNILR**LKKFPDRCFRSI 235
           V +   SP   ++L K  +R  L KFP  C RS+
Sbjct: 657 VLYYLFSPLFTLELWKLRVRGALSKFPTNCLRSV 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,760
Number of Sequences: 5004
Number of extensions: 50821
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)