Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4523
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   6.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 279 VNVKLDGCATLVVCKDIYS 335
           +NV L G     VCKDI S
Sbjct: 15  INVLLHGQVICFVCKDITS 33


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 399 IYV-NNQQKRDTRVALRQCHDHMSKYPYRQPV*HSHLILH 283
           +Y+  N QK+ TR   R   D+MSK   + PV  + L L+
Sbjct: 235 VYILQNLQKKRTRAEGRLSSDNMSK---KSPVRKATLFLN 271


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 471 APLFTGTLYNYCKQALMPNIKCIII 397
           AP+F G  Y  C  +   NI  III
Sbjct: 94  APIFKGIGYATCVLSCWTNIYYIII 118


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -2

Query: 471 APLFTGTLYNYCKQALMPNIKCIII 397
           AP+F G  Y  C  +   NI  III
Sbjct: 147 APIFKGIGYATCVLSCWTNIYYIII 171


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 534 QNIFRYGLISSLGKDSLNRL 475
           +NIF+YG +S   + ++ +L
Sbjct: 659 ENIFKYGYVSHANQRNMYKL 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,635
Number of Sequences: 438
Number of extensions: 3308
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)