Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4522
         (818 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.4  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         27   4.2  
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy...    25   9.8  
SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation co...    25   9.8  

>SPAC16E8.02 |||DUF962 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 222

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +2

Query: 14  RHSSKWKDFNINHTNAYWYLFVP*RVDNGLRKVLLKINKTKKCILPVR 157
           R + K KD   N+ N   +LF P  V++ +  V+   ++   CI P+R
Sbjct: 165 RANIKLKDVGENYPNLSEFLFPPSMVEDAVSGVVEDASQLSYCIRPLR 212


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 515 LLNTALILDKCMHKDSTVTYFVFKSYFMTKLEIKE 411
           LL+T  I   C+HK  TV Y  F  Y+++K EI +
Sbjct: 199 LLSTDPIPSSCIHKIITVDY--FSIYWISKCEISK 231


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 208 IILLVLHISLHDFCLHKSYR*YTFFCFVY 122
           II L L+  +   C  K+Y  ++FFC+V+
Sbjct: 38  IIFLFLNYVVDIVCYVKNYNGFSFFCWVF 66


>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 522 YYSIKHGTYIRQMYAQRFNSYLLRIQELLYDKIRD 418
           Y   KH   IRQ+  +      L IQE +YDK+ D
Sbjct: 242 YEKFKHAVAIRQLRRKE-----LGIQETIYDKVLD 271


>SPAC17D4.02 |cdc45|sna41, goa1|DNA replication pre-initiation
           complex subunit Cdc45|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 223 IENERIILLVLHISLHDFCLHKSY 152
           +E+E   +LV H SL+D  LH +Y
Sbjct: 309 LEDEFRFMLVRHWSLYDSMLHSAY 332


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,319,443
Number of Sequences: 5004
Number of extensions: 68182
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)