Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4522
         (818 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical ...    29   5.3  
Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical pr...    28   9.2  
AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine r...    28   9.2  

>Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical
           protein E01G4.5 protein.
          Length = 385

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 151 CKIYVSKSHEVKCAKPIR*CVHFRC 225
           C  +V K+H   C K  R C HF C
Sbjct: 289 CYQFVEKNHAKNCEKKCRSCGHFEC 313


>AF003383-2|AAB54235.2|  344|Caenorhabditis elegans Hypothetical
           protein ZC250.3 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 16/82 (19%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = -2

Query: 280 AVFNTK-HTVTGQMPILKFCIENERIILLVLHISLHDFCLHKSYR*YTFFCFVYFE*YFS 104
           A+F  +  T+   +P L + ++N    + + H+    FC+    + +T   F+YF  +  
Sbjct: 79  AIFEHRSETLKVCIPALIYTLQNNLYYIALSHLEATTFCISYQMKIFTTAIFMYF--FLG 136

Query: 103 QTVIYPLWYK*VPVSVGMINVK 38
           + +    W+  V + +G+ +++
Sbjct: 137 KKLSTKQWWALVLLVLGVADIQ 158


>Z81132-9|CAB03438.1|  320|Caenorhabditis elegans Hypothetical
           protein T26E4.11 protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -3

Query: 156 LTGNIHFFVLFILSNTFRKPLSTRYG 79
           + G IHF + F +S  +RK +   +G
Sbjct: 275 INGTIHFLICFFMSTLYRKTVKEMFG 300


>AF068713-10|AAC17801.1|  376|Caenorhabditis elegans Serpentine
           receptor, class w protein130 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 2/83 (2%)
 Frame = -3

Query: 336 IGRTIKRSEVC*IELWFMMLFLTLNIP*RVKCPF*NFASKMNASSYWFCTFHFMTFAYIN 157
           + +T   ++   I ++  ++FL + +P  +      F +  N+         F    Y+ 
Sbjct: 259 VSKTDSNTKSTKIIIYTAIIFLIVELPLGINLAIIWFFN--NSVGIKLILDQFEALFYML 316

Query: 156 LTGNI--HFFVLFILSNTFRKPL 94
           LT N   HFFV F+LS+ +R  L
Sbjct: 317 LTANTISHFFVCFVLSSQYRATL 339


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,497
Number of Sequences: 27780
Number of extensions: 387209
Number of successful extensions: 785
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2019417216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)