Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4522
         (818 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   5.9  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   5.9  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   5.9  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.8  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 593 VVHVLETTSRAASFTYCKNCNEHCKNL 673
           VVHV     +      C+  N HC +L
Sbjct: 20  VVHVYHPYRQPDGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +2

Query: 593 VVHVLETTSRAASFTYCKNCNEHCKNL 673
           VVHV     +      C+  N HC +L
Sbjct: 20  VVHVYHPYRQPDGMNQCQAVNGHCSHL 46


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 263 FSVKNSIINHNSIQH 307
           +  KNS+  H S+QH
Sbjct: 45  YRTKNSLTTHKSLQH 59


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +1

Query: 685 TIVVLFLHYKKSNVEYLA 738
           TIV+L +HY+K +   +A
Sbjct: 316 TIVILNVHYRKPSTHKMA 333


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,206
Number of Sequences: 438
Number of extensions: 4849
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26096055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)