Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4519
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   2.3  
SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...    27   4.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    26   5.4  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    26   5.4  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    26   7.2  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   9.5  

>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 660 FGYWPSF*FLTPLA*KLAGKTTIYPRIFHS 571
           FGYWP+F F   L   L  K   YP+++ S
Sbjct: 473 FGYWPAFSFYDELLKLLRNK---YPKVYSS 499


>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 420 HVQLGLMHLKKLFAEYTHPQQPLTDAEKDD-KLYNMLPLFCKVIGTSPSSEMNEKFWDIL 596
           +V+ GL H+  L  E    +  L  ++ D  +L   LP  CK +G   +   N+     +
Sbjct: 131 NVKYGLNHVVALI-EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTV 189

Query: 597 SFCQQVSKLMVSEIRKRASNQSTEAASCAIAKF 695
              +  + L V+E+R+   N+     S   A F
Sbjct: 190 IHQKTAAVLAVTEVREEDKNELASIVSAVDANF 222


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 564  LMDWCQSPYKIEAAYCKVYHLFQRLLVVVE 475
            L+ W Q P K+  ++  + HLFQ+ + + E
Sbjct: 2751 LIKWHQLPEKVNQSHYSLLHLFQQFVELQE 2780


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 453 LFAEYTHPQQPLTDAEKDDKLYNMLP 530
           LF+ Y H  Q   D      LYNM+P
Sbjct: 148 LFSSYPHAAQARVDPSISKDLYNMVP 173


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = -2

Query: 652 LALFLISDTISLETCWQNDNISQNFSFISL 563
           +++F +S T SLETC ++ +    + F S+
Sbjct: 1   MSIFRLSRTFSLETCLKSSSFKIRWRFFSV 30


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 222 FYWHNNYSQYIGSCLKWKSV 281
           F+W NN+S ++ SCL + SV
Sbjct: 94  FFWRNNHSVFV-SCLIYVSV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,987,587
Number of Sequences: 5004
Number of extensions: 57942
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)