Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4518
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    31   0.24 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.3  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.9  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    26   5.2  
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei...    26   6.9  
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo...    25   9.1  

>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 208 PVPPVVKAPRSPMIPPSAPRSLGSASCD 291
           P PP V   ++P IPP APR+L +AS D
Sbjct: 379 PKPPSVPTIQAP-IPPEAPRNLTNASVD 405


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 208 PVPPVVKAPRSPMIPPSAPRSL 273
           P PP +     P +PPSAP SL
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSL 439



 Score = 26.6 bits (56), Expect = 3.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 184 PPGMELDRPVPPVVKAPRSPMIPPSAP 264
           PP +    P    + AP +P +PPSAP
Sbjct: 428 PPSLPPSAPPSLPMGAPAAPPLPPSAP 454


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 178  IQP--PGMELDRPVPPVVKAPRSPM--IPPSAP 264
            +QP  PGM  + P P    AP +P+  +PP+ P
Sbjct: 1458 VQPKAPGMVTNAPAPSSAPAPPAPVSQLPPAVP 1490



 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = +1

Query: 184  PPGMELDRPVPPVVKAPRSPMIPP 255
            PP M    P PP +  P  P  PP
Sbjct: 1699 PPQMSAPTPPPPPMSVPPPPSAPP 1722



 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +1

Query: 211  VPPVVKAPRSPMIPPSAP 264
            VPP   AP  P  PPSAP
Sbjct: 1714 VPPPPSAPPMPAGPPSAP 1731


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 418  CHRLLEKFHYSWEMM--PLVLVIMNYARSDLDEASRKIY 528
            CH  LE FHY    +   +V  + NYA  D      K+Y
Sbjct: 1472 CHNCLEWFHYECVGLSSDIVSTLSNYACPDCCSKEGKLY 1510


>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 586

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 587 PSNTFKLCFLAYSSTIIFPS*IFLEA 510
           P+ TFK+C    +STII P+   +EA
Sbjct: 485 PTETFKVCSERLTSTIIAPARTAVEA 510


>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
           Sap49|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +1

Query: 184 PPGMELDRPVPPVVKAPRSPMIP 252
           PPGM +  P P     P +P++P
Sbjct: 293 PPGMVMASPSPAAATIPGAPVMP 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,689,706
Number of Sequences: 5004
Number of extensions: 48255
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)