Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4518
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0614 - 4545306-4545833 32 0.58
02_01_0163 + 1135592-1135623,1135718-1135816,1135904-1135960,113... 31 0.77
07_03_0106 - 13460882-13462086,13463452-13463629 30 2.3
09_06_0006 + 20149326-20149646,20149750-20149824 29 3.1
09_02_0543 + 10427321-10428315,10428440-10429154 29 3.1
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 29 3.1
01_01_0797 - 6198401-6199114 29 3.1
10_08_0236 + 16078162-16078731 29 4.1
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 4.1
05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069 29 4.1
02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317 29 5.4
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 5.4
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129... 28 7.2
07_03_0873 + 22194172-22195434,22195534-22195670,22197531-221976... 28 7.2
03_06_0297 - 32924162-32924605 28 7.2
03_04_0024 + 16556026-16556588,16556757-16556868 28 7.2
02_04_0538 + 23739830-23740126,23740205-23740261,23740344-237404... 28 7.2
12_01_0840 - 7847239-7847531,7847576-7847675,7848312-7848388,784... 28 9.5
11_05_0086 + 18964493-18965737,18965896-18966360 28 9.5
>07_01_0614 - 4545306-4545833
Length = 175
Score = 31.9 bits (69), Expect = 0.58
Identities = 16/36 (44%), Positives = 22/36 (61%)
Frame = -1
Query: 238 CVAPSPLVVQAYPTPSPGAVFLIPAHAHALRPEPGP 131
C+ P PL+ +A+P+P A L+P ALRP P P
Sbjct: 9 CLRPPPLLRRAFPSP---ATRLLPPQTLALRPLPLP 41
>02_01_0163 +
1135592-1135623,1135718-1135816,1135904-1135960,
1136053-1136116,1136174-1136392,1138562-1138945
Length = 284
Score = 31.5 bits (68), Expect = 0.77
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 184 PPGMELDRPVPPVVKAPRSPMIPPSAPRSLGSASCD 291
PP P PP V +P +P +PP P A D
Sbjct: 167 PPRTRQVNPAPPPVPSPSAPPLPPQPPPPRNQAQAD 202
>07_03_0106 - 13460882-13462086,13463452-13463629
Length = 460
Score = 29.9 bits (64), Expect = 2.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 81 PYRRQAAGNGKANGNQTGPGSGRSACAC 164
P RR+A+ G N+ G G+G++ AC
Sbjct: 14 PMRREASAVGGREANEAGVGNGKAVAAC 41
>09_06_0006 + 20149326-20149646,20149750-20149824
Length = 131
Score = 29.5 bits (63), Expect = 3.1
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 81 PYRRQAAGNGKANG---NQTGPGSGRSACACAGIRNTAPGDG 197
P RR AAG G A GPG+GR AG+ P G
Sbjct: 53 PMRRGAAGGGSARAWLCGGAGPGAGRGRGGAAGVVVIPPSCG 94
>09_02_0543 + 10427321-10428315,10428440-10429154
Length = 569
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 184 PPGMELDRPVPPVVKAPRSPMIPPSAP 264
PP D P PP AP+S PP AP
Sbjct: 36 PPPPAPDMPPPPPTPAPQSSPAPPPAP 62
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -1
Query: 229 PSPLVVQAYPTPSPGAVFLIPAHAHALRPEPGPV 128
P+ P P P + H HAL+P+P PV
Sbjct: 102 PTAAAAAPAPPPPPAPAPSLHHHLHALQPQPAPV 135
>01_01_0797 - 6198401-6199114
Length = 237
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +3
Query: 45 LQISALHL*KVPPYRRQAAGNGKANG-NQTGPGSGRSACACAGIRNTAPGDGV 200
L SAL V YR+ G G G N+ GPG+ + CA + A G+ V
Sbjct: 91 LDASALAALPVTAYRKNGGGGGGGEGSNRGGPGATAADCAVC-LSELADGEKV 142
>10_08_0236 + 16078162-16078731
Length = 189
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 96 AAGNGKANGNQTGPGSGRSACACAGIRNTAP 188
A+GNG NGN G+G A +G N +P
Sbjct: 159 ASGNGGGNGNGENGGNGSGAGGGSGYGNASP 189
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 4.1
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +1
Query: 184 PPGMELDRPVPPVVKAPRSPMIPPSAP 264
PP RP PP+ APR P P P
Sbjct: 241 PPHHPAPRPPPPMAAAPRQPAALPPVP 267
>05_06_0052 + 25199253-25199304,25199676-25199949,25200709-25201069
Length = 228
Score = 29.1 bits (62), Expect = 4.1
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = +3
Query: 99 AGNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG 203
AG G G TG G+G A AG T PG G
Sbjct: 141 AGTGTGVGTGTGTGAGMGTGAGAGTGITTPGSTTG 175
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +3
Query: 102 GNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG*ACTTSGEGA 233
G G + G TG G+G + AG+ G GVG T +G GA
Sbjct: 116 GTGTSTGTGTGVGTGGTGTGGAGV-GAGTGTGVG---TGTGTGA 155
>02_01_0275 - 1828300-1828344,1828396-1828531,1828623-1829317
Length = 291
Score = 28.7 bits (61), Expect = 5.4
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 202 PTPSPGAVFLIPAHAHALRPEPGP 131
P P+P A L+P A A RP P P
Sbjct: 138 PPPAPAAPVLVPPPAPAPRPAPAP 161
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 196 ELDRPVPPVVKAPRSPMIPPSAPRS 270
+ ++P+PP + P P +PP PRS
Sbjct: 45 QYEKPLPPEDQLPPPPPLPPPPPRS 69
>10_08_0630 -
19410852-19411235,19411370-19412257,19412440-19412941,
19413662-19414135,19414982-19415040,19415468-19415629
Length = 822
Score = 28.3 bits (60), Expect = 7.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 208 PVPPVVKAPRSPMIPPSAP 264
P+PP++ AP ++PP AP
Sbjct: 407 PMPPIIAAPAITVMPPPAP 425
>07_03_0873 +
22194172-22195434,22195534-22195670,22197531-22197639,
22197739-22197865,22197952-22198012,22199332-22199722
Length = 695
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 75 VPPYRRQAAGNGKANGNQTGPGSGRSACA 161
+PP R + G G+ G G G GR+A A
Sbjct: 1 MPPRRYKGRGRGRGRGRGRGKGRGRAADA 29
>03_06_0297 - 32924162-32924605
Length = 147
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 175 GIQPPGMELDRP-VPPVVKAPRSPMIPPSAPRSL 273
G + PG + P +P V PR+P +PP P L
Sbjct: 89 GPEQPGPSIPSPPMPEVPDVPRNPDVPPPKPPEL 122
>03_04_0024 + 16556026-16556588,16556757-16556868
Length = 224
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 241 GCVAPSPLVVQAYPTPSPGAVFLIPAHAHALRPEP 137
G VAPSPL P+PS A+F + + P P
Sbjct: 53 GLVAPSPLPDPPPPSPSVAAIFSFSSSSLIFPPPP 87
>02_04_0538 +
23739830-23740126,23740205-23740261,23740344-23740441,
23740565-23740640,23741316-23741345,23741833-23741961,
23742077-23742123,23742477-23742531,23742939-23743038,
23743568-23743674,23743760-23743906,23744232-23744378,
23744473-23744526,23744873-23744914
Length = 461
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 199 LDRPVPPVVKAPRSPMIPPSAPRSLGSASC 288
LD+ V K+P S PP +P + +ASC
Sbjct: 40 LDQAVQSSTKSPASSSSPPPSPTTTAAASC 69
>12_01_0840 -
7847239-7847531,7847576-7847675,7848312-7848388,
7848486-7848738
Length = 240
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +3
Query: 93 QAAGNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG 203
Q GNG G+ G G G+ C G G G G
Sbjct: 157 QGGGNGSGYGSGYGSGYGQGGGVCGGSYGQGGGGGGG 193
>11_05_0086 + 18964493-18965737,18965896-18966360
Length = 569
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +1
Query: 214 PPVVKAPRSPMIPPSAP-RSLGSASCD 291
PP + PRSP++ P P RS CD
Sbjct: 220 PPYMYIPRSPLLSPPPPRRSCSPQGCD 246
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,221,448
Number of Sequences: 37544
Number of extensions: 405938
Number of successful extensions: 2304
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2263
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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