Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4518
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          36   6e-04
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    26   0.34 
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   3.2  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   5.5  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.3  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 35.5 bits (78), Expect = 6e-04
 Identities = 12/17 (70%), Positives = 17/17 (100%)
 Frame = +1

Query: 58  HCTCEKCRLTADRQRVM 108
           +CTCEKC++TA+RQ+VM
Sbjct: 3   YCTCEKCKITANRQQVM 19


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +3

Query: 72  KVPPYRRQAAGNGKANGNQTGPGSGRSACACAGIRNTAPGDGVG 203
           + PPY R    N     +Q   GSG       G R+ +P  G+G
Sbjct: 79  RFPPYNRMDMRNATYYQHQQDHGSGMD--GMGGYRSASPSPGMG 120


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +1

Query: 469 VLVIMNYARSDLDEASRKIYEGKMIVDEYARKHNLNVFDGLELRNSTRQ 615
           V+V+ + A SDL      IY G++ V + +    L   + L +   T+Q
Sbjct: 70  VIVLQDVAFSDLHALVEFIYHGEVNVHQRSLSSFLKTAEVLRVSGLTQQ 118


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 28  KGHKRYCKYQHCTCEKCRLTADRQR 102
           K  + Y KY+  + E+ R  A+R+R
Sbjct: 50  KNEREYRKYRETSKERSRDRAERER 74


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 28  KGHKRYCKYQHCTCEKCRLTADRQR 102
           K  K Y KY+  + E+ R   +R+R
Sbjct: 51  KNEKEYRKYRETSKERSRDRTERER 75


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 484  NYARSDLDEASRKIYEGKMIV 546
            NY R  L EA R +  G+M V
Sbjct: 1042 NYDRDSLVEAVRAVQRGEMSV 1062


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,193
Number of Sequences: 438
Number of extensions: 3586
Number of successful extensions: 37
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)