Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4517
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine re...    27   8.8  
AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine re...    27   8.8  

>AC024800-2|AAF60723.2|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein305 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 420 QKFYFIIKLIFVFSCASKLGDSENSYPYYRVFKF*LVVPVAISLLFVAAVM 268
           Q F+F+   I+  +C      SE++    R+F    +V V IS+  +A V+
Sbjct: 218 QTFFFLFHTIYHLTCVGSATVSESAKKLQRMFL--KIVSVQISIPLIAIVL 266


>AC024800-1|AAF60725.1|  320|Caenorhabditis elegans Serpentine
           receptor, class h protein57 protein.
          Length = 320

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 420 QKFYFIIKLIFVFSCASKLGDSENSYPYYRVFKF*LVVPVAISLLFVAAVM 268
           Q F+F+   I+  +C      SE++    R+F    +V V IS+  +A V+
Sbjct: 218 QTFFFLFHTIYHLTCVGSATVSESAKKLQRMFL--KIVSVQISIPLIAIVL 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,220,923
Number of Sequences: 27780
Number of extensions: 50273
Number of successful extensions: 106
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)