Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4514
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    29   0.41 
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   3.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    26   5.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   8.8  
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces...    25   8.8  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   8.8  

>SPAC343.13 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 526

 Score = 29.5 bits (63), Expect = 0.41
 Identities = 18/45 (40%), Positives = 24/45 (53%)
 Frame = -2

Query: 176 LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISS 42
           L+ D +K  S    SRILL      +  L IVTK  F+  NT+S+
Sbjct: 129 LEQDTAKSTSAKNPSRILLDYNRAGTPLLEIVTKPCFHDVNTVSA 173


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 387 LGGSPAHYASGVKGLSSYGST 449
           LG SPA  ASG+ G S +GS+
Sbjct: 109 LGTSPAEPASGLVGSSGFGSS 129


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 24  SSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHA 146
           ++ N G  +S G    S  +  QG+ G  + S   PA  +A
Sbjct: 121 NNANTGTSFSFGSNAGSTGFGSQGTGGGLFGSSTTPATTNA 161


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = -1

Query: 351 KYIAAAIALDPVRLHRQCGILQR-CW 277
           K+I +    D  RL+R C  L+R CW
Sbjct: 219 KFILSVFHPDAARLYRLCSSLKRICW 244


>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 632

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 156 LAPITLQPTHGAGGLVSGDISQIMNQLSHSLNSGALSLQPSNSVAEF 296
           L P++      A GLV G +    + L  S  +G+  +QPS  + E+
Sbjct: 476 LTPLSSHFPSAATGLVGGQVYPQSSVLQSSKINGSAKVQPSVKLPEW 522


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 39  GAGYSIGGIKPSFSY 83
           G G S+GG+ P FSY
Sbjct: 142 GGGASVGGMAPMFSY 156


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,441,452
Number of Sequences: 5004
Number of extensions: 46420
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)