Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4514
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0589 + 20850249-20850491,20850583-20851839                       29   3.9  
10_08_0630 - 19410852-19411235,19411370-19412257,19412440-194129...    29   3.9  
03_06_0193 + 32243458-32243556,32243566-32244273                       29   3.9  
10_01_0267 - 2828966-2829340,2831164-2831629,2833390-2833487,283...    28   5.2  
03_06_0146 - 31976538-31978643,31978653-31978751                       28   5.2  
03_01_0092 - 731069-731434,731569-733080                               28   5.2  
09_01_0027 - 469856-470773,470780-471261,471296-471408,471453-47...    28   6.8  
08_02_1111 + 24377268-24377444,24377543-24377630,24378072-243781...    28   6.8  
11_04_0403 + 17298498-17298713,17298799-17299696,17299874-173005...    27   9.0  
09_02_0412 - 8731559-8731651,8731729-8731762,8732250-8732501,873...    27   9.0  
07_01_0281 - 2067696-2068862                                           27   9.0  
01_03_0093 - 12422558-12422607,12422679-12422935,12423565-124239...    27   9.0  

>12_02_0589 + 20850249-20850491,20850583-20851839
          Length = 499

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 194 ACAVSG-LQCDRSKLNSGMTISRILLRCVLKPSRSLTIVTKAWFYSTNTISSSDINR 27
           A AVSG  +    +   G T+ R LL+ +  P RS  +V + W     T+    +NR
Sbjct: 10  AAAVSGGAEGGGGEGRGGDTLGRRLLKLIY-PKRSAAVVLRRWAEEGRTVQKYQLNR 65


>10_08_0630 -
           19410852-19411235,19411370-19412257,19412440-19412941,
           19413662-19414135,19414982-19415040,19415468-19415629
          Length = 822

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +3

Query: 81  YDGQGSAGLQYASQEYP-ANGHATIQLAPITLQPTHGAG--GLVSGDISQIMNQLSHSLN 251
           YDG G  G Q +S  +P A  HA IQL          AG  G +  +IS  M +L +S +
Sbjct: 496 YDGSGGGGGQPSSSRWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRS 555

Query: 252 S 254
           S
Sbjct: 556 S 556


>03_06_0193 + 32243458-32243556,32243566-32244273
          Length = 268

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 9   SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 188
           S  D  S+ +  G  +GG      +  +G A     +    A  H TI +  + LQP+  
Sbjct: 8   SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAAVGADTPAALPHTTIAVEAVPLQPSPS 67

Query: 189 AGG 197
             G
Sbjct: 68  PPG 70


>10_01_0267 -
           2828966-2829340,2831164-2831629,2833390-2833487,
           2833782-2834078,2834287-2834694
          Length = 547

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +3

Query: 93  GSAGLQYASQEYPANGHATIQLAPITLQPTHGAGGLVSGDISQI 224
           GS+G  YA ++ P  G AT+Q   + LQ  HG GG V  + S++
Sbjct: 4   GSSGGGYADEKGP--GAATMQA--LGLQQQHGGGGEVEEESSEM 43


>03_06_0146 - 31976538-31978643,31978653-31978751
          Length = 734

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/63 (25%), Positives = 25/63 (39%)
 Frame = +3

Query: 9   SHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQYASQEYPANGHATIQLAPITLQPTHG 188
           S  D  S+ +  G  +GG      +  +G A     +    A  H TI +  + LQP+  
Sbjct: 8   SDSDGDSVELHDGSDVGGSDSESGFAVRGRAAAVVGADTPAALPHTTIAVEAVPLQPSPS 67

Query: 189 AGG 197
             G
Sbjct: 68  PPG 70


>03_01_0092 - 731069-731434,731569-733080
          Length = 625

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 6   NSHGDASSINVGAGYSIGGIKPSFSYDGQGSAG 104
           N +G AS+ N G G S GG++   S +G  +AG
Sbjct: 448 NGNGWASANNGGGGSSSGGMQTKASNNGTATAG 480


>09_01_0027 -
           469856-470773,470780-471261,471296-471408,471453-472003,
           472089-472328
          Length = 767

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = -2

Query: 608 PELRKDNPVRECPP 567
           PE++KDNPV E PP
Sbjct: 538 PEMQKDNPVPEVPP 551


>08_02_1111 +
           24377268-24377444,24377543-24377630,24378072-24378157,
           24378358-24378511,24378723-24378883,24378964-24379632,
           24379860-24380058,24380188-24380405,24380578-24380755,
           24380859-24381358
          Length = 809

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 137 WSCHYSTCSYHIATHSRRRRSSIW 208
           W+C ++  SY  AT SR +   IW
Sbjct: 663 WACSWNPFSYEFATGSRDKTVKIW 686


>11_04_0403 +
           17298498-17298713,17298799-17299696,17299874-17300592,
           17301714-17301806,17301884-17302051
          Length = 697

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 608 PELRKDNPVRECPPAARRSRAS 543
           PE++K+NPV E PP    S A+
Sbjct: 499 PEMQKENPVPEVPPEIAVSEAA 520


>09_02_0412 -
           8731559-8731651,8731729-8731762,8732250-8732501,
           8732585-8733996
          Length = 596

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -2

Query: 608 PELRKDNPVRECPP 567
           PE+ KDNPV E PP
Sbjct: 242 PEMHKDNPVPEVPP 255


>07_01_0281 - 2067696-2068862
          Length = 388

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 3   TNSHGDASSINVGAGYSIGGIKPSFSYDGQGSAGLQ 110
           T++ G  S  + G G S  G KP+ S     SAG Q
Sbjct: 237 TSNGGSGSGSDKGKGVSYAGDKPASSSSSSSSAGQQ 272


>01_03_0093 -
           12422558-12422607,12422679-12422935,12423565-12423932,
           12423939-12424800,12425247-12425464
          Length = 584

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 608 PELRKDNPVRECPP 567
           PE++K+NPVR+ PP
Sbjct: 436 PEMQKENPVRKVPP 449


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,886,739
Number of Sequences: 37544
Number of extensions: 343425
Number of successful extensions: 908
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)