Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4513
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    29   0.36 
SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces ...    28   0.84 
SPCC1235.13 |ght6|meu12|hexose transporter Ght6 |Schizosaccharom...    27   1.1  
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po...    27   1.5  
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ...    27   1.5  
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...    27   1.5  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    27   1.5  
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos...    27   1.9  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   5.9  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    25   7.8  
SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1 ...    25   7.8  
SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|...    25   7.8  

>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 29.1 bits (62), Expect = 0.36
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
 Frame = -1

Query: 395 WGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSNL 237
           W F  SFF  FIT+ I F   +I  + N     + FL  +  K  +  + N+ Y SNL
Sbjct: 384 WNFLISFFTPFITNSIGFKYGYIFASCNLTGAAIIFLFVHETKGRTLEEINTMYASNL 441


>SPCC1235.14 |ght5||hexose transporter Ght5 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 546

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -1

Query: 398 MWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 288
           +WGF  SFF  FIT+ I F   +I       F ACN+
Sbjct: 413 LWGFLISFFTPFITNSIGFKYGYI-------FAACNL 442


>SPCC1235.13 |ght6|meu12|hexose transporter Ght6
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 535

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
 Frame = -1

Query: 395 WGFSSSFFFNFITDLINF-FVY-FIPININVA---FLACNV*KNDSTSKSNSCYFSNLHR 231
           W F  SFF  FI++ I F + Y F   N+  A   FL     K  +  + N  Y SN+  
Sbjct: 416 WNFMISFFTPFISNSIGFKYGYVFAACNLCAAIIIFLFAKETKGLTLEEINQLYLSNIKP 475

Query: 230 YKT 222
           + T
Sbjct: 476 WNT 478


>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 374 FFNFITDLINFFVYFIPININVAFLA 297
           FFN +    N F+ F PI I + F+A
Sbjct: 133 FFNILLRSFNLFIIFSPIIITLPFIA 158


>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = -1

Query: 398 MWGFSSSFFFNFITDLINFFVYFIPININ-----VAFLACNV*KNDSTSKSNSCYFSN 240
           +W F  SFF  FIT+ I F   +I  + N     V FL  +  K  +  + N  Y S+
Sbjct: 413 LWNFLISFFTPFITNSIGFKYGYIFASCNLCASIVTFLFAHESKGLTLEEINELYLSD 470


>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 81  PKNEDASEEAKKIVDDAKNF 140
           P  ++A EEAK I ++AKNF
Sbjct: 154 PITQEAVEEAKPITEEAKNF 173


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 398 MWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 288
           +WGF  +FF  FI+D I F   +I       F ACN+
Sbjct: 413 LWGFLITFFTPFISDSIGFKYGYI-------FAACNL 442


>SPBP35G2.05c |cki2||serine/threonine protein kinase
           Cki2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 305 FLACNV*KNDSTSKSNSCYFSNLHRYKTSY 216
           +L  NV +ND + K NS   +   R+K+SY
Sbjct: 322 YLGLNVVQNDDSRKKNSTLQTQNMRFKSSY 351


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 75  AKPKNEDASEEAKKIVDD-AKNFIERAIAD 161
           +KP NED  E+ K I +D +K   E++ +D
Sbjct: 227 SKPSNEDNVEDKKDITNDSSKETAEKSSSD 256


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 230  IYEDWKSSSCWTWRWSHSFTHCKPKRL 310
            I+  WK  +  T+   H F HC  KRL
Sbjct: 1355 IWNLWKLRTKATFGGQHDFQHCINKRL 1381


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 398 MWGFSSSFFFNFITDLINFFVYFIPI 321
           +WG     FFN +  +  F+V   PI
Sbjct: 480 IWGSCIGLFFNILCLMAQFYVSLFPI 505


>SPBC1198.14c |fbp1|SPBC660.04c|fructose-1,6-bisphosphatase Fbp1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 347

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = +3

Query: 333 INKKVDKISDKIEKEATGKSPHWF---EKVERFVD 428
           +N K D+I D + K   GKS  W     +VE +++
Sbjct: 310 VNDKGDRILDLVPKTLHGKSSIWLGSKHEVEEYIN 344


>SPBC1604.09c |||exoribonuclease Rex4 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 260

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 321 NWDKINKKVDKI-SDKIEKEATGKSPH 398
           NW+K+ KK+D   S ++EK+ + +  +
Sbjct: 5   NWEKLKKKLDSAKSGRVEKKHSNEKKY 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,559,969
Number of Sequences: 5004
Number of extensions: 27256
Number of successful extensions: 103
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)