Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4513
(479 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-5|CAA88970.1| 138|Caenorhabditis elegans Hypothetical pr... 40 0.001
AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical ... 29 1.7
Z70038-4|CAA93881.1| 427|Caenorhabditis elegans Hypothetical pr... 28 3.1
AF106575-16|AAC78161.2| 334|Caenorhabditis elegans Serpentine r... 28 4.0
AF067613-9|AAN73863.2| 326|Caenorhabditis elegans Serpentine re... 28 4.0
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 27 5.3
Z49968-8|CAE17875.1| 144|Caenorhabditis elegans Hypothetical pr... 27 5.3
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 27 5.3
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 27 5.3
Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical pr... 27 9.3
>Z49130-5|CAA88970.1| 138|Caenorhabditis elegans Hypothetical
protein T06D8.7 protein.
Length = 138
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/102 (24%), Positives = 41/102 (40%)
Frame = +3
Query: 84 KNEDASEEAKKIVDDAKNFIERAIADIGKTSATKQLILGTASGWITGFISMXXXXXXXXX 263
KN+ S +A K V DA + + + D+ K QL +G G +TG+
Sbjct: 6 KNDGGSGKAGKGVSDAIDTVLYYVVDLKKQQPMVQLGVGAGFGTVTGYFVTKGGRLVAAT 65
Query: 264 XXXXXXXXXXXSQKGYIDINWDKINKKVDKISDKIEKEATGK 389
KGYI +N KI + + + + + +GK
Sbjct: 66 VGISFLLAQFAIHKGYITLNESKIERDMKNLHKSVMNKVSGK 107
>AF016657-1|AAB93653.1| 361|Caenorhabditis elegans Hypothetical
protein C16C4.7 protein.
Length = 361
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = -3
Query: 477 PLFPSFL*VLQLYPIFGLQIFPPFQTNVGIFQ*LLFQFYH*SYQLFCLFYPN*YQ 313
P+FP F + ++P+F + FP FQ + F F +Q+FC +P +Q
Sbjct: 106 PVFPVFQFPVPVFPVFQVFQFPVFQFWISSFSVSSFLV----FQIFCSRFPVSFQ 156
>Z70038-4|CAA93881.1| 427|Caenorhabditis elegans Hypothetical
protein ZK1067.5 protein.
Length = 427
Score = 28.3 bits (60), Expect = 3.1
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -1
Query: 416 FHLFKPMWGFSSSFFFNFITDLINFFVYFIPININVAFLACNV 288
+ + +PMW F SF+F ++ L F P+ V ++ C++
Sbjct: 311 YTILEPMWSFLDSFYFCLVSLLTVGFGDLHPVG-TVEYMLCSI 352
>AF106575-16|AAC78161.2| 334|Caenorhabditis elegans Serpentine
receptor, class h protein3 protein.
Length = 334
Score = 27.9 bits (59), Expect = 4.0
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 422 KSFHLFKPMWGFSSSFFFNFITDLINFFVYFIPININV 309
K F FKP + FF NF + + F+V+FI I V
Sbjct: 170 KRFGTFKPYMWCDNCFFMNFSSKI--FYVFFIVAGIAV 205
>AF067613-9|AAN73863.2| 326|Caenorhabditis elegans Serpentine
receptor, class z protein20 protein.
Length = 326
Score = 27.9 bits (59), Expect = 4.0
Identities = 8/29 (27%), Positives = 19/29 (65%)
Frame = -1
Query: 377 FFFNFITDLINFFVYFIPININVAFLACN 291
F +++ ++I F + +PI + +++L CN
Sbjct: 261 FDIDYVLEIIPFDCFLLPIIVQISYLGCN 289
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 300 QKGYIDINWDKINKKVDKISDKIEKEATGKSPH 398
+KG+ +++D + K+++ +D++ + G SPH
Sbjct: 88 KKGHRFVDFDAVRKEIEDETDRVTGQNKGISPH 120
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 300 QKGYIDINWDKINKKVDKISDKIEKEATGKSPH 398
+KG+ +++D + K+++ +D++ + G SPH
Sbjct: 88 KKGHRFVDFDAVRKEIEDETDRVTGQNKGISPH 120
>Z49968-8|CAE17875.1| 144|Caenorhabditis elegans Hypothetical
protein M110.9 protein.
Length = 144
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/31 (29%), Positives = 22/31 (70%)
Frame = +3
Query: 327 DKINKKVDKISDKIEKEATGKSPHWFEKVER 419
++INK++DK+ +K++++ + W +VE+
Sbjct: 40 EQINKEIDKLVEKLDEKTKQEHKAWKLRVEK 70
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 300 QKGYIDINWDKINKKVDKISDKIEKEATGKSPH 398
+KG+ +++D + K+++ +D++ + G SPH
Sbjct: 88 KKGHRFVDFDAVRKEIEDETDRVTGQNKGISPH 120
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 27.5 bits (58), Expect = 5.3
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = +3
Query: 300 QKGYIDINWDKINKKVDKISDKIEKEATGKSPH 398
+KG+ +++D + K+++ +D++ + G SPH
Sbjct: 88 KKGHRFVDFDAVRKEIEDETDRVTGQNKGISPH 120
>Z71259-2|CAA95790.1| 336|Caenorhabditis elegans Hypothetical
protein F13G3.2 protein.
Length = 336
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Frame = -1
Query: 410 LFKPMWGFSS--SFFFNFITDLINFFVYFIPI 321
++ P GFS SF F F+T I YF+P+
Sbjct: 178 IYAPFSGFSDTRSFQFLFVTAAIAIGAYFVPL 209
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,343,354
Number of Sequences: 27780
Number of extensions: 143958
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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