Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4513
         (479 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.56 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   2.2  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.2  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.6 bits (51), Expect = 0.56
 Identities = 6/26 (23%), Positives = 14/26 (53%)
 Frame = +2

Query: 203 CIRMDNWFYIYEDWKSSSCWTWRWSH 280
           C + + + Y+Y+++    C   +W H
Sbjct: 560 CDQCEEYEYVYDEYTCMDCGPGKWPH 585


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 5/26 (19%), Positives = 14/26 (53%)
 Frame = +2

Query: 203 CIRMDNWFYIYEDWKSSSCWTWRWSH 280
           C + + + Y+++++    C   +W H
Sbjct: 470 CDQCEEYEYVHDEYTCMDCGPGKWPH 495


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -1

Query: 167 TNICNGSFDKVFSVVYNFF 111
           T++C+ S  ++F  + NFF
Sbjct: 27  TDVCSASNGELFLALLNFF 45


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 395 WGFSSSFFFNFITDLINFF 339
           W F  + F++ I D+I ++
Sbjct: 468 WAFGVNRFYDGIRDMIGYY 486


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 395 WGFSSSFFFNFITDLINFF 339
           W F  + F++ I D+I ++
Sbjct: 521 WAFGVNRFYDGIRDMIGYY 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,677
Number of Sequences: 438
Number of extensions: 1923
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)