Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4512
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   5.5  
SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit Mdm12|Schi...    25   7.3  
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch...    25   7.3  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 148 CGRENRCEACIPCY 189
           CG +N C  C PC+
Sbjct: 114 CGLDNTCVLCAPCF 127


>SPBC28F2.06c |mdm12||Mdm10/Mdm12/Mmm1 complex subunit
           Mdm12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 273

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 178 IPCYITHTKVFTKHFGSI 231
           +P YI H KV   HFG +
Sbjct: 31  LPSYIKHLKVVDFHFGKV 48


>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1374

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 457  DNGFAVDQSLLFCLPILVTSTGYST 531
            D+GF++ QSL F LP+ + S G +T
Sbjct: 1231 DSGFSL-QSLQFVLPLFLNSLGDAT 1254


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,182
Number of Sequences: 5004
Number of extensions: 39921
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)