Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4512
         (546 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical pr...    28   3.8  
U39472-4|AAK31389.2|  319|Caenorhabditis elegans Helix loop heli...    28   5.0  
U39472-3|AAN39683.1|  320|Caenorhabditis elegans Helix loop heli...    28   5.0  
U39472-2|AAN39684.1|  324|Caenorhabditis elegans Helix loop heli...    28   5.0  
M59940-2|AAA16290.1|  320|Caenorhabditis elegans CeMyoD, alterna...    28   5.0  
M59940-1|AAA16289.1|  324|Caenorhabditis elegans CeMyoD protein.       28   5.0  
U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical ...    27   6.7  
Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical pr...    27   8.8  
U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone...    27   8.8  
AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.      27   8.8  
AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.      27   8.8  

>Z66497-9|CAA91286.1|  457|Caenorhabditis elegans Hypothetical
           protein K08F8.4 protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = -2

Query: 185 HGIHASHLFSRPHKAY-ACYEIL 120
           H ++ SH+ SRP K +  CYE+L
Sbjct: 53  HDVNLSHIESRPSKTHEGCYEVL 75


>U39472-4|AAK31389.2|  319|Caenorhabditis elegans Helix loop helix
           protein 1, isoformc protein.
          Length = 319

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 NNPSRLLE*VGKKAKIGQLQTHYQSNQQIS 437
           NN  R+L+  GK  KI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>U39472-3|AAN39683.1|  320|Caenorhabditis elegans Helix loop helix
           protein 1, isoforma protein.
          Length = 320

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 NNPSRLLE*VGKKAKIGQLQTHYQSNQQIS 437
           NN  R+L+  GK  KI +   H Q  QQI+
Sbjct: 200 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 229


>U39472-2|AAN39684.1|  324|Caenorhabditis elegans Helix loop helix
           protein 1, isoformb protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 NNPSRLLE*VGKKAKIGQLQTHYQSNQQIS 437
           NN  R+L+  GK  KI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>M59940-2|AAA16290.1|  320|Caenorhabditis elegans CeMyoD,
           alternatively spliced productprotein.
          Length = 320

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 NNPSRLLE*VGKKAKIGQLQTHYQSNQQIS 437
           NN  R+L+  GK  KI +   H Q  QQI+
Sbjct: 200 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 229


>M59940-1|AAA16289.1|  324|Caenorhabditis elegans CeMyoD protein.
          Length = 324

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 526 NNPSRLLE*VGKKAKIGQLQTHYQSNQQIS 437
           NN  R+L+  GK  KI +   H Q  QQI+
Sbjct: 204 NNLERMLQQAGKMTKIMEQNQHLQMTQQIN 233


>U41535-3|AAB63403.2|  266|Caenorhabditis elegans Hypothetical
           protein F18A1.7 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 118 KRIS*HA*ALCGRENRCEACIPC--YITHTKVFTKHFGSIDLLCSALFQLF 264
           K +   A  +CG   +   C+    Y  H K+F K   S++ +C+    LF
Sbjct: 74  KNVVHQARKVCGHHAQAITCLKKEQYCDHNKLFAKASSSVEYMCATKHVLF 124


>AF067942-5|AAG45580.2|  345|Caenorhabditis elegans Hypothetical
           protein ZK6.5 protein.
          Length = 345

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/62 (19%), Positives = 24/62 (38%)
 Frame = -1

Query: 456 KAISKLAKPMIVSRQIKSNPIHNYYTKQYSENISQTIATDDYRLKQXXXXXXXXNFSWQV 277
           K I    + +I+    + + + NYYT   +  I + I  +     +         ++W  
Sbjct: 89  KCIDSTIQKLILMEAHRKDLMANYYTSYLNPTIDEVIRLNKVEYTRKSQNHQMSFYNWAF 148

Query: 276 HC 271
           HC
Sbjct: 149 HC 150


>Z50858-5|CAA90722.1|  534|Caenorhabditis elegans Hypothetical
           protein F44A6.2 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 DSTGEKNFVTRISFMRPREQV*SVYSVLYNAHKSF 209
           D + +  FV  IS +  +E+V +VY  +  AH +F
Sbjct: 233 DKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTF 267


>U13074-1|AAA96982.1|  534|Caenorhabditis elegans steroid hormone
           receptor familymember CNR14 protein.
          Length = 534

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 DSTGEKNFVTRISFMRPREQV*SVYSVLYNAHKSF 209
           D + +  FV  IS +  +E+V +VY  +  AH +F
Sbjct: 233 DKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTF 267


>AF273840-1|AAG15187.1|  553|Caenorhabditis elegans sex-1 protein.
          Length = 553

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 DSTGEKNFVTRISFMRPREQV*SVYSVLYNAHKSF 209
           D + +  FV  IS +  +E+V +VY  +  AH +F
Sbjct: 230 DKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTF 264


>AF049869-1|AAC77795.1|  556|Caenorhabditis elegans SEX-1 protein.
          Length = 556

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 105 DSTGEKNFVTRISFMRPREQV*SVYSVLYNAHKSF 209
           D + +  FV  IS +  +E+V +VY  +  AH +F
Sbjct: 233 DKSPDSVFVPEISTLERQEEVDAVYEAVLRAHTTF 267


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,752,000
Number of Sequences: 27780
Number of extensions: 224694
Number of successful extensions: 519
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)