Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4512
         (546 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    27   0.12 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    27   0.12 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    25   0.50 

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 98  FTGQYRGKEFRNTHKLYAAERTGVKRVFRAI*RTQKFLQNISAPLTFFVRLCFNYFA*QW 277
           FT  +  ++F    +L   +RTGV+ +        +F++NI  P TFFV    +YF    
Sbjct: 57  FTLDFYFRQFWTDPRLAFKKRTGVETLSVG----SEFIKNIWVPDTFFVNEKQSYFHIAT 112

Query: 278 TCHE 289
           T +E
Sbjct: 113 TSNE 116


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 27.1 bits (57), Expect = 0.12
 Identities = 20/64 (31%), Positives = 32/64 (50%)
 Frame = +2

Query: 98  FTGQYRGKEFRNTHKLYAAERTGVKRVFRAI*RTQKFLQNISAPLTFFVRLCFNYFA*QW 277
           FT  +  ++F    +L   +RTGV+ +        +F++NI  P TFFV    +YF    
Sbjct: 57  FTLDFYFRQFWTDPRLAFKKRTGVETLSVG----SEFIKNIWVPDTFFVNEKQSYFHIAT 112

Query: 278 TCHE 289
           T +E
Sbjct: 113 TSNE 116


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 25.0 bits (52), Expect = 0.50
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +2

Query: 119 KEFRNTHKLYAAERTGVKRVFRAI*RTQKFLQNISAPLTFFVRLCFNYFA*QWTCHE 289
           ++F    +L   +RTGV+ +        +F++NI  P TFFV    +YF    T +E
Sbjct: 3   RQFWTDPRLAFKKRTGVETLSVG----SEFIKNIWVPDTFFVNEKQSYFHIATTSNE 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,035
Number of Sequences: 438
Number of extensions: 2598
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)