Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4508
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0211 + 20957553-20957828,20957944-20958258,20962094-209628...    31   0.45 
11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413           28   5.6  

>02_04_0211 +
           20957553-20957828,20957944-20958258,20962094-20962801,
           20963362-20963609,20963758-20964101,20964200-20964236,
           20964270-20964575,20965281-20965347,20965498-20965626
          Length = 809

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -1

Query: 375 SKNRTDIIKQLICYFKKTMELRLPRRASESNSKAWIFSVGFRSLEDPEQCH 223
           S+    I++ L   F++ +  R PRR  + +   W+      ++ +PEQCH
Sbjct: 450 SEEDETIMELLADAFQRNVSTRAPRRVPQQSGMQWV----METMNNPEQCH 496


>11_01_0284 + 2107562-2107811,2107928-2108208,2108589-2109413
          Length = 451

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = +2

Query: 437 VYNKCCKRHNCVCCKQTHYYLIKKGGPGT 523
           ++  CC   NC+ C+Q  +Y  ++   G+
Sbjct: 315 MFTPCCCDRNCISCRQLQFYQQQQAEDGS 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,278,963
Number of Sequences: 37544
Number of extensions: 231534
Number of successful extensions: 411
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)