Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4506
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc...    27   1.5  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   1.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   4.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    26   4.7  
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   6.2  
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    25   6.2  

>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
           Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 593

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -2

Query: 473 LLELIDIYDVNAPPTFRYKF*GLKYSYNGCPTLQTETHYCFTAEIDI*HKLECGIFEK 300
           LL+L+      AP    Y   G+  S +G         YC     D+  +LEC +F K
Sbjct: 187 LLKLVRAPKFEAPEVDNYVVMGIVASNSGTRETVNGNKYCMLTLTDLKWQLECFLFGK 244


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = -3

Query: 427 SDISSKVSSIVTTAAPPFKPKRITASRQKLTFDTNWNVEFSKN 299
           S  SS   +IV+    PF    + A+    TFD + N+  SKN
Sbjct: 98  STTSSANPAIVSNGGSPFYKNPVVANNPSSTFDMSTNLFNSKN 140


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 277  LAKVELSGFSKIPHSNLCQMSISAVKQ*CV 366
            LAK+     S++  SNLCQ S++ V++ CV
Sbjct: 1138 LAKLLFIIISQMWKSNLCQESVALVERYCV 1167


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 3    NKSFLFIILKYYYRCMCIFDCTTKRAPS 86
            N S LF    ++ RC  +FDC     P+
Sbjct: 2959 NSSCLFTFAVFWQRCESLFDCEYLSTPN 2986


>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -2

Query: 290 STFANSLNHLNTNLFIKDGKCQLPCSNEG*IQV 192
           S+  NSL  LN   F+K+  C +P   +G +Q+
Sbjct: 401 SSDLNSLKSLNLQSFVKNICCDVPLPPKGLLQL 433


>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 33  YYYRCMCIFDCTTKRAPSNFKRNN 104
           Y+  C    DC  +   SNFKR+N
Sbjct: 97  YHRECFRCHDCRKQIIDSNFKRDN 120


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,470,709
Number of Sequences: 5004
Number of extensions: 50510
Number of successful extensions: 101
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)