Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4506
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,816...    29   2.7  
01_06_1749 - 39636951-39638102                                         29   3.6  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   6.3  
03_03_0033 + 13933562-13933886,13933945-13934069                       28   6.3  

>05_03_0076 + 8164466-8164511,8164643-8164698,8165529-8165867,
            8165938-8166012,8166674-8166846,8168697-8168795,
            8169002-8169161,8169321-8169464,8169551-8169723,
            8169796-8169991,8170061-8170258,8170864-8171016,
            8171838-8171959,8172037-8172136,8172221-8172316,
            8172400-8172530,8173717-8173819,8174373-8174555,
            8174632-8174724,8174818-8174853,8175672-8175773,
            8176310-8176472,8176557-8176678,8176994-8177158,
            8177667-8177849,8178679-8178831,8179136-8179288,
            8179373-8179444,8179530-8179664,8179739-8179800,
            8179999-8180096,8180628-8180737,8180832-8181005,
            8181092-8181157,8181847-8181915,8181989-8182099,
            8182418-8182558,8182638-8182766,8182864-8183029,
            8183174-8183388,8184883-8185089,8185501-8185572,
            8185897-8186010,8186090-8186281,8186489-8186569,
            8186654-8186728,8186812-8186878,8187292-8187452,
            8187943-8188116,8188209-8188337,8188421-8188504,
            8188589-8188650,8188728-8188800,8189008-8189142,
            8189790-8189960,8190054-8190319,8190440-8190458
          Length = 2448

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +1

Query: 142  RASRVLRPRFWGQPMSLTWIQPSFEHGN*HLPSLMKRLVFK*FKLLAKVELSGFSKIPHS 321
            R S  L  R +    SL+    S +HGN HL S   R V     +  +V+        H 
Sbjct: 2376 RMSHKLTGRDFSSGSSLSGAGSSTQHGNEHLASGDTREVEPGLSVKVQVQRLILQATSHE 2435

Query: 322  NLCQ 333
            NLCQ
Sbjct: 2436 NLCQ 2439


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -3

Query: 406 SSIVTTAAPPFKPKRITA 353
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 378 GGAAVVTILETLELISEGGRRIHVVNV 458
           G  A VT L  L + +EGG ++H+++V
Sbjct: 552 GWVAAVTTLNFLRIFTEGGLQMHILSV 578


>03_03_0033 + 13933562-13933886,13933945-13934069
          Length = 149

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 164 GLKTRLARG*SLISSGLRFVIVSFKI 87
           GLK  LA+G S+ S+G+ F I +F I
Sbjct: 15  GLKQGLAKGVSINSNGITFTIFAFNI 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,144,302
Number of Sequences: 37544
Number of extensions: 326829
Number of successful extensions: 619
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)