Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4506
         (585 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    29   6.1  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      29   6.1  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    29   6.1  

>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 410 GLKYSYNGCPTLQTETHYC--FTAEIDI*HKLECGIFEKPLNSTFANSLNHLNTNLFIKD 237
           G KYS   CP   ++       +   D+    +C I E+   S      NH+NT++  K 
Sbjct: 291 GHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQ-NHINTHMGNKP 349

Query: 236 GKCQL 222
            KC+L
Sbjct: 350 HKCKL 354


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 410 GLKYSYNGCPTLQTETHYC--FTAEIDI*HKLECGIFEKPLNSTFANSLNHLNTNLFIKD 237
           G KYS   CP   ++       +   D+    +C I E+   S      NH+NT++  K 
Sbjct: 291 GHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQ-NHINTHMGNKP 349

Query: 236 GKCQL 222
            KC+L
Sbjct: 350 HKCKL 354


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -2

Query: 410 GLKYSYNGCPTLQTETHYC--FTAEIDI*HKLECGIFEKPLNSTFANSLNHLNTNLFIKD 237
           G KYS   CP   ++       +   D+    +C I E+   S      NH+NT++  K 
Sbjct: 291 GHKYSCPHCPYTASKKFLITRHSRSHDVEPSFKCSICERSFRSNVGLQ-NHINTHMGNKP 349

Query: 236 GKCQL 222
            KC+L
Sbjct: 350 HKCKL 354


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,862,917
Number of Sequences: 53049
Number of extensions: 541626
Number of successful extensions: 1289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2338128087
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)