Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4506
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily ass...    27   7.4  
U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily ass...    27   7.4  
AF106590-3|AAC78235.1|  148|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -3

Query: 391 TAAPPFKPKRITASRQKLT--FDTNWNVEFSKNHSILPS 281
           T+  P   +  ++S  +L   FDTNWN E S + S+ PS
Sbjct: 282 TSQWPSSNQSYSSSHDRLNRQFDTNWNFEMSGSSSVAPS 320


>U41021-9|AAQ81276.1|  408|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform b protein.
          Length = 408

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 575 IGRIGYRAPPRVFLFLFF--YC*MG 507
           IG  G+ APP VF F F+  YC  G
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCNSG 372


>U41021-8|AAQ81275.1|  406|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 24, isoform a protein.
          Length = 406

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
 Frame = -2

Query: 575 IGRIGYRAPPRVFLFLFF--YC*MG 507
           IG  G+ APP VF F F+  YC  G
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCNSG 370


>AF106590-3|AAC78235.1|  148|Caenorhabditis elegans Hypothetical
           protein F08B6.1 protein.
          Length = 148

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/38 (42%), Positives = 19/38 (50%)
 Frame = -2

Query: 365 THYCFTAEIDI*HKLECGIFEKPLNSTFANSLNHLNTN 252
           T   FT +I+     E G+F K LN      LN LNTN
Sbjct: 115 TQVFFTTDIEC----EEGLFWKALNDNMMEKLNALNTN 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,764,033
Number of Sequences: 27780
Number of extensions: 282619
Number of successful extensions: 642
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 642
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)