Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4504
         (524 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   3.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   3.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   3.3  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   7.7  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 9/28 (32%)
 Frame = -2

Query: 463 ICGRYWGTAE*---------GHSLGVGD 407
           +CGR++G  +          GHS+G+GD
Sbjct: 125 VCGRFYGNIQTVXNNWLLLEGHSIGIGD 152


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 151 LLEVTEQQQETLVPVVSASTPPRKP 225
           L EV E +     P VS S+PPR+P
Sbjct: 120 LCEVPESRDGP--PSVSLSSPPREP 142


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 437 SCPPIPAADKELISGAVRPAAAAISEP 517
           SC P+P   +++ S  + P A++ S P
Sbjct: 78  SCDPVPGNLEQIGSRPLHPPASSTSLP 104


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.0 bits (42), Expect = 7.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 296 PSAPTSITLFAVS*SILFKAVCSSGFLGG 210
           PSAP ++T+  V  S +F +  +   LGG
Sbjct: 318 PSAPQNLTVNFVDQSTVFLSWNAPHMLGG 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.130    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,452
Number of Sequences: 438
Number of extensions: 1998
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14722920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)