Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4503
(766 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 29 0.73
SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase Ogm1|Schi... 28 1.7
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c... 28 1.7
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce... 27 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.1
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 25 9.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.0
SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe... 25 9.0
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 25 9.0
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 25 9.0
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 29.1 bits (62), Expect = 0.73
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +2
Query: 347 PTTSNYANYNKLCLDSENYCGSTMLYFYVFIYLGNS 454
P ++Y NY + D YCG++M + + FI S
Sbjct: 606 PILTSYENYKQSFSDVTIYCGTSMFHSHKFILCARS 641
>SPAC22A12.07c |ogm1|oma1|protein O-mannosyltransferase
Ogm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 893
Score = 27.9 bits (59), Expect = 1.7
Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 3/105 (2%)
Frame = +3
Query: 393 VRITVAVLCFIFMCLFIW---ETAQNKQYVTNRQTNKLHMVSAVNIRYDCRKNKETFHMI 563
+ I + L F+ + F W E Q + + T+ L A+ + K F
Sbjct: 171 IMIEIPALYFMSLTAFYWSVYEAQQKRPFSLRWHTSLLSTGVALGLALST-KLSAMFTFG 229
Query: 564 HLLGLKLYNLKITNFTGEC*TCDIFNINHLAAFIFYLLPVTLSVF 698
LL L ++L N G+ + HL ++IFYL+ V ++V+
Sbjct: 230 WLLILAAFHL--WNLLGDLSVPMYRIVKHLFSYIFYLIGVPITVY 272
>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 767
Score = 27.9 bits (59), Expect = 1.7
Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Frame = -3
Query: 329 ADRYQHPAYFCRKAVMHFGLRGRAAVVY*----DLGAYISRWVAHLRCRCLWAPVTT*HQ 162
A Y P M+FG+ RAAV A S VA LR R W+ +
Sbjct: 395 AGMYLSPTLAHEVVYMYFGIAMRAAVANGMHKKSANAQFSGDVAELRKRLFWSVYCMERK 454
Query: 161 VG*ELGHP 138
+G LG P
Sbjct: 455 IGISLGRP 462
>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 544
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 606 FTGEC*TCDIFNINHLAAFIFYLLPVTLSVF 698
F GE IF++ +AAF+ + P+ L VF
Sbjct: 401 FAGEAAINAIFSVGAIAAFVAFTTPIFLRVF 431
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.2 bits (55), Expect = 5.1
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Frame = +2
Query: 203 VNVPPTLRYKLQGLNIQQ-------LPCLSNRNALLLYGRNRQGAGTYPRRLTRGPTTSN 361
V VPPT + L LN+Q + + RN + + G YP R ++ P S
Sbjct: 161 VEVPPTYHF-LSLLNVQLRIQPIWWMDEFAERNGIESLLSALRNLGHYPERASKTPLESQ 219
Query: 362 YANYNKLCLDSEN 400
CL+SEN
Sbjct: 220 IIQSLFHCLNSEN 232
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 25.4 bits (53), Expect = 9.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +3
Query: 306 GRVLVPIRAGLQEVLLPVIMQIIINYVWIVRITVAVLCFIF 428
GRV I +G + +L+ +I Q N + I A+ CF++
Sbjct: 861 GRVACEITSGDELLLVELIFQGFFNQMPPEEIAAALSCFVY 901
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 25.4 bits (53), Expect = 9.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +1
Query: 466 NMLQIGKQTNSTWCPLSTSDMIVER 540
N+L T+ ++CP T+D +ER
Sbjct: 1455 NLLNPNATTSCSYCPYQTADQFLER 1479
>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 513
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = +2
Query: 299 RNRQGAGTYPRRL-TRGPTTSNYANYNKLCLDSENYCGSTML 421
R RQ YP + R N+ N L +ENY G+ +L
Sbjct: 99 RYRQRKSVYPMLMFLRSSLLRNFGNIGNSSLYTENYSGTKIL 140
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.4 bits (53), Expect = 9.0
Identities = 11/66 (16%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +1
Query: 436 YLFGKQPKTN-NMLQIGKQTNSTWCPLSTSDMIVERTKKHST*FIFSD*NCIISKLLILQ 612
+LF +PK + + K + +CP + + + + F+ + NC+ K ++
Sbjct: 551 HLFDHRPKDRKSCFETYKGVENKFCPAGVYEYVNDEASSYGKRFVINSQNCVHCKTCDIK 610
Query: 613 ESVKHV 630
+ ++ +
Sbjct: 611 DPLQGI 616
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 25.4 bits (53), Expect = 9.0
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Frame = +2
Query: 116 IFFYCLDMGGLALSPPGVKWLL-----EPIDIYNVNVPPTLRYKLQG 241
+ +C D+ L P V W++ E +D Y V T RY G
Sbjct: 337 VVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGRTARYNRSG 383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,946
Number of Sequences: 5004
Number of extensions: 64212
Number of successful extensions: 151
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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