Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4502
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0015 + 27065104-27065428,27065539-27066257                       31   1.1  
04_04_0339 - 24513699-24516827                                         29   2.6  
02_01_0454 + 3263666-3265375                                           29   4.5  
04_04_0308 + 24286923-24286927,24288430-24288907,24288980-242890...    28   7.8  
03_01_0535 + 4006284-4006418,4006483-4006599,4007363-4007587,400...    28   7.8  
01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110     28   7.8  

>05_07_0015 + 27065104-27065428,27065539-27066257
          Length = 347

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/68 (32%), Positives = 34/68 (50%)
 Frame = +2

Query: 83  QDTFLKATMGDSQSENQALLRIEEVACDDVSTISPIGPDELPPPYQQVGMPMVSCRVCQA 262
           +DT+LK ++G        ++  +    DD S ++   P ELPPP   VG P+       +
Sbjct: 35  EDTWLKLSLGP-------VIYTDATNVDD-SPVTTTFPKELPPPPAAVGPPIFMASATTS 86

Query: 263 LIDIRGKK 286
           LID  GK+
Sbjct: 87  LID-HGKE 93


>04_04_0339 - 24513699-24516827
          Length = 1042

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +2

Query: 236  MVSCRVCQALIDIRGKKEQHVVKCSE 313
            ++ C  C+ L ++RG +E H+ +C+E
Sbjct: 951  LLECSECEGLRELRGIEELHISRCTE 976


>02_01_0454 + 3263666-3265375
          Length = 569

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 77  HCQDTFLKATMGDSQSENQALLRIEEVACDDVSTISPIGPD 199
           +  D FL+  +GD     QAL+ I E+  +D+  +  +  D
Sbjct: 144 YINDLFLRVRIGDLAQRKQALVTIGELLSEDIEYVKIVALD 184


>04_04_0308 +
           24286923-24286927,24288430-24288907,24288980-24289099,
           24289182-24289235,24289467-24289579,24289799-24290011,
           24290123-24290201,24290323-24290376,24290448-24290522,
           24291029-24291193,24291843-24291941,24292186-24292241,
           24292331-24292433,24293289-24293417,24293657-24293835,
           24293953-24293977,24294060-24294175,24294252-24294342
          Length = 717

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 395 CKLVGNCKGTEHTSCL 348
           CK  G C G++HT C+
Sbjct: 599 CKRTGGCSGSQHTPCI 614


>03_01_0535 +
           4006284-4006418,4006483-4006599,4007363-4007587,
           4008112-4008205,4008587-4008661,4009045-4009123,
           4009385-4009400,4009441-4009584,4009822-4009904,
           4010012-4010093
          Length = 349

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = -1

Query: 216 YGGGNSSGPIGEIVLTSSHATSSILSKA*FSL 121
           +G     GP GE++ T+ H  ++I+++  +SL
Sbjct: 287 WGHSTLVGPFGEVIATAEHEETTIMAEIDYSL 318


>01_06_0810 - 32141657-32142105,32142986-32143034,32144961-32145110
          Length = 215

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +1

Query: 223 SRDAYGLLPSVPSTD*HSWEKRATCSEMFRMQRSYAYKECSARQE-VCSVPLQLPTN 390
           +R+ +G +P++   D   WE RA C  + R  +    K+   ++  +  V L++ +N
Sbjct: 48  ARNPFGQVPALQDGDLFLWESRAICKYVCRKNKPELLKDGDLKESAMVDVWLEVESN 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,223,194
Number of Sequences: 37544
Number of extensions: 444382
Number of successful extensions: 1202
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1202
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)