Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4502
         (675 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC020947-1|AAH20947.1|  277|Homo sapiens transmembrane protein 5...   160   5e-39
BC002867-1|AAH02867.2|  277|Homo sapiens transmembrane protein 5...   160   5e-39
BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 5...   145   1e-34
L47665-1|AAC41926.1|  419|Homo sapiens K+ channel beta-subunit p...    31   4.9  
AK092533-1|BAC03911.1|  325|Homo sapiens protein ( Homo sapiens ...    31   4.9  

>BC020947-1|AAH20947.1|  277|Homo sapiens transmembrane protein 55B
           protein.
          Length = 277

 Score =  160 bits (388), Expect = 5e-39
 Identities = 75/122 (61%), Positives = 84/122 (68%), Gaps = 7/122 (5%)
 Frame = +2

Query: 194 PDELPPPYQQV------GMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGK 355
           P E PPPY  +        PM++CRVCQ+LI++ GK  QHVVKC  C EATPIKNAPPGK
Sbjct: 61  PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK 120

Query: 356 KYVRCPCNCLLICKSSSQRIACPRADCKRIINLAXXXXXXXXXXXXGMD-RVICAHCQDT 532
           KYVRCPCNCLLICK +SQRIACPR  CKRIINL              M  RVIC HC++T
Sbjct: 121 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT 180

Query: 533 FL 538
           FL
Sbjct: 181 FL 182


>BC002867-1|AAH02867.2|  277|Homo sapiens transmembrane protein 55B
           protein.
          Length = 277

 Score =  160 bits (388), Expect = 5e-39
 Identities = 75/122 (61%), Positives = 84/122 (68%), Gaps = 7/122 (5%)
 Frame = +2

Query: 194 PDELPPPYQQV------GMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGK 355
           P E PPPY  +        PM++CRVCQ+LI++ GK  QHVVKC  C EATPIKNAPPGK
Sbjct: 61  PGEDPPPYSPLTSPDSGSAPMITCRVCQSLINVEGKMHQHVVKCGVCNEATPIKNAPPGK 120

Query: 356 KYVRCPCNCLLICKSSSQRIACPRADCKRIINLAXXXXXXXXXXXXGMD-RVICAHCQDT 532
           KYVRCPCNCLLICK +SQRIACPR  CKRIINL              M  RVIC HC++T
Sbjct: 121 KYVRCPCNCLLICKVTSQRIACPRPYCKRIINLGPVHPGPLSPEPQPMGVRVICGHCKNT 180

Query: 533 FL 538
           FL
Sbjct: 181 FL 182


>BC033892-1|AAH33892.1|  257|Homo sapiens transmembrane protein 55A
           protein.
          Length = 257

 Score =  145 bits (352), Expect = 1e-34
 Identities = 68/126 (53%), Positives = 83/126 (65%), Gaps = 13/126 (10%)
 Frame = +2

Query: 200 ELPPPYQQV------GMPMVSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKY 361
           ELPPPY  +      G+P+++CRVCQ+LI++ GK  QHVVKC+ C EATPIKN P GKKY
Sbjct: 37  ELPPPYTAIASPDASGIPVINCRVCQSLINLDGKLHQHVVKCTVCNEATPIKNPPTGKKY 96

Query: 362 VRCPCNCLLICKSSSQRIACPRADCKRIINLAXXXXXXXXXXXXGM-------DRVICAH 520
           VRCPCNCLLICK +S+RI CPR +C+RIINL                       RV+C H
Sbjct: 97  VRCPCNCLLICKDTSRRIGCPRPNCRRIINLGPVMLISEEQPAQPALPIQPEGTRVVCGH 156

Query: 521 CQDTFL 538
           C +TFL
Sbjct: 157 CGNTFL 162


>L47665-1|AAC41926.1|  419|Homo sapiens K+ channel beta-subunit
           protein.
          Length = 419

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -1

Query: 339 FFIGVASLHSEHFTTCCSFFPRMSISAWHTRQETIGIPTC*YGGGNSSGPIGEIVLTSSH 160
           +++ +  L SEH T C +  P  ++     R   +G+ T    GG  S  + E ++T ++
Sbjct: 70  WYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAY 129


>AK092533-1|BAC03911.1|  325|Homo sapiens protein ( Homo sapiens
           cDNA FLJ35214 fis, clone PROST1000512, highly similar to
           Homo sapiens secretory mucin MUC6 (MUC6) mRNA. ).
          Length = 325

 Score = 30.7 bits (66), Expect = 4.9
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
 Frame = +1

Query: 271 HSWEKRATCSEMFRMQRSYAYKECSARQEVCSVPLQLP---TNLQVIFATYSLSSC*LQE 441
           HS    AT S  F    S+  +  S+R     +  QLP   +    +  T  LSS     
Sbjct: 44  HSSFSTATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVSTTNQLSSSFSPS 103

Query: 442 DYQPSTITSYSTCAHSA 492
              PST++SY   +HS+
Sbjct: 104 PSAPSTVSSYVPSSHSS 120


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,543,398
Number of Sequences: 237096
Number of extensions: 2506852
Number of successful extensions: 5226
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5222
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7615267504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)