Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4502
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical...   124   8e-29
Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical pr...    31   0.75 
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p...    31   0.99 
Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical p...    31   0.99 
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical pr...    31   0.99 
Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical pr...    31   0.99 
AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical ...    29   4.0  
AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical pr...    28   7.0  
AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative tran...    28   7.0  

>AC024859-26|AAK29977.2|  300|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.2 protein.
          Length = 300

 Score =  124 bits (298), Expect = 8e-29
 Identities = 50/73 (68%), Positives = 59/73 (80%)
 Frame = +2

Query: 239 VSCRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKYVRCPCNCLLICKSSSQRIA 418
           V CRVC   + + G+ +QHVVKC  C EATPI+ APPGKKYVRCPCNCLLICK+SS RIA
Sbjct: 59  VLCRVCDVAVSLEGRNQQHVVKCHSCDEATPIRPAPPGKKYVRCPCNCLLICKASSTRIA 118

Query: 419 CPRADCKRIINLA 457
           CPR +C+R+I LA
Sbjct: 119 CPRNNCRRVITLA 131


>Z50874-6|CAA90765.1|  759|Caenorhabditis elegans Hypothetical
           protein R10E4.4 protein.
          Length = 759

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 5/81 (6%)
 Frame = +2

Query: 197 DELPPPYQQVGMPMVS-----CRVCQALIDIRGKKEQHVVKCSECKEATPIKNAPPGKKY 361
           DE P   +QV    VS       +  A   +R K  +  ++C +CK   P  +  PG + 
Sbjct: 131 DEYPTSLRQVKSAQVSQVVKISGIIVAAAQVRSKATKVTLQCRQCKHTIPDVSIKPGLEG 190

Query: 362 VRCPCNCLLICKSSSQRIACP 424
              P  C    +   QR  CP
Sbjct: 191 FALPRTCAAPQQGQMQR--CP 209


>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 SQSENQALLRIEEVACDDVSTISPIGPDELPPP 214
           SQSE++   R +++  D VS  S   PD LPPP
Sbjct: 276 SQSESRRSSRTDKMEVDQVSGASKRKPDGLPPP 308


>Z73899-10|CAA98081.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 SQSENQALLRIEEVACDDVSTISPIGPDELPPP 214
           SQSE++   R +++  D VS  S   PD LPPP
Sbjct: 276 SQSESRRSSRTDKMEVDQVSGASKRKPDGLPPP 308


>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
           protein ZK617.1b protein.
          Length = 7158

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 SQSENQALLRIEEVACDDVSTISPIGPDELPPP 214
           SQSE++   R +++  D VS  S   PD LPPP
Sbjct: 276 SQSESRRSSRTDKMEVDQVSGASKRKPDGLPPP 308


>Z73897-4|CAA98064.2| 6839|Caenorhabditis elegans Hypothetical
           protein ZK617.1a protein.
          Length = 6839

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 116 SQSENQALLRIEEVACDDVSTISPIGPDELPPP 214
           SQSE++   R +++  D VS  S   PD LPPP
Sbjct: 276 SQSESRRSSRTDKMEVDQVSGASKRKPDGLPPP 308


>Z37139-6|CAB63431.2|  591|Caenorhabditis elegans Hypothetical
           protein C14B1.10 protein.
          Length = 591

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 227 GMPMVSCRVCQALIDIRGKKEQHVVKC 307
           G+  + C +C  L DI  KK+ HV +C
Sbjct: 410 GLLKIGCDMCMGLCDIARKKDCHVARC 436


>AL021571-3|CAC70102.2|  344|Caenorhabditis elegans Hypothetical
           protein T19A6.4 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 345 GAFFIGVASLHSEHFTTCCSFFPRMSISAW 256
           G FFIG   L        CSF P + +SAW
Sbjct: 278 GGFFIGNQKLSQTISYPICSFAPGLIVSAW 307


>AF016439-2|AAB65897.1|  176|Caenorhabditis elegans Hypothetical
           protein R02F11.1 protein.
          Length = 176

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
 Frame = +2

Query: 296 VVKCSECKEATPIKNAPPG----KKYVRCPCNCLLICKSSSQ 409
           V+   + KEA  I+ A       K+   CP NC   C SSSQ
Sbjct: 19  VLNAEDAKEAPEIREANSTVFRQKRQFGCPSNCYSSCSSSSQ 60


>Z99278-5|CAB16489.1|  290|Caenorhabditis elegans Hypothetical
           protein Y53C12B.5a protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 281 KKEQHVVKCSECKEATPIKNAPPGKKYVRCPC-NCLLI 391
           +K  +  +C    E  P K   P  +Y++CPC  C ++
Sbjct: 23  EKNYYCQRCLNHGELKPRKGHKPDCRYLKCPCRECTMV 60


>AF022388-1|AAC38956.1|  290|Caenorhabditis elegans putative
           transcription factor MAB-3 protein.
          Length = 290

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +2

Query: 281 KKEQHVVKCSECKEATPIKNAPPGKKYVRCPC-NCLLI 391
           +K  +  +C    E  P K   P  +Y++CPC  C ++
Sbjct: 23  EKNYYCQRCLNHGELKPRKGHKPDCRYLKCPCRECTMV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,875,047
Number of Sequences: 27780
Number of extensions: 379578
Number of successful extensions: 941
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)