Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4502
         (675 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   3.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.5  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -1

Query: 174 LTSSHATSSILSKA*FSLWLSPIVAFKNVS*QCAQIT 64
           L  SH  + +L K  F  WL  +  + N S    Q+T
Sbjct: 636 LIPSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVT 672


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)
 Frame = -1

Query: 342 AFFIGVA--SLHSEHFTTCCSFFPRMSISAWHTRQETIGIP--TC*YGGGNSSGPIGEIV 175
           +FF  V+  SL SE++T     F    ++ +  R         T  Y GG +    G + 
Sbjct: 98  SFFSSVSPTSLGSENYTGISDLFVFDDLNDYINRLNYSAFVNLTAYYDGGANLNLNGTVN 157

Query: 174 LTSSHATSSILS 139
            TSS A+S ++S
Sbjct: 158 CTSSIASSGVVS 169


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -2

Query: 83  DNVHRLLYPCRAEWAPVTPPV 21
           +N  RL   C A+W  + PP+
Sbjct: 374 ENEMRLRNGCPADWLWIVPPI 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,792
Number of Sequences: 438
Number of extensions: 4287
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)