Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4501
         (455 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_02_0013 - 8544589-8544873,8545175-8545339,8545444-8545707,854...    31   0.58 
10_08_1003 - 22162526-22163155,22163305-22163448,22163565-221636...    29   2.3  
03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,547...    28   3.1  
09_04_0501 + 18153252-18153453,18153973-18154224,18154809-181550...    28   4.1  
03_03_0274 - 16089322-16089365,16089604-16089616,16090367-160907...    28   4.1  
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879...    27   5.4  
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748...    27   9.5  

>04_02_0013 -
           8544589-8544873,8545175-8545339,8545444-8545707,
           8545822-8545944,8546032-8546151
          Length = 318

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 77  PWLSPAPDDKYTDRYDNVNLDEVLSNSRLLQP 172
           P LSPA DD++ DR     +D +L + RL+ P
Sbjct: 6   PLLSPASDDRFWDRL-RTRVDTILEDRRLVAP 36


>10_08_1003 -
           22162526-22163155,22163305-22163448,22163565-22163692,
           22163794-22164066,22164416-22164689
          Length = 482

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 158 RLLQPYIKCILDKDRCAPDAKELKEHIREALE 253
           ++LQ     I D  RCAPD   L +H+ EAL+
Sbjct: 295 KVLQELAVSIRDHHRCAPDV--LSDHLHEALQ 324


>03_02_0078 + 5476288-5476626,5477474-5477670,5477750-5477885,
            5478055-5478132,5478227-5478280,5478466-5478650,
            5478781-5480374,5480506-5480700,5480753-5480904,
            5481213-5481486,5481597-5481733,5482219-5482258,
            5482773-5483261,5483605-5484168
          Length = 1477

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 15/78 (19%), Positives = 34/78 (43%)
 Frame = +2

Query: 215  AKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYE 394
            A +   HIR   + E    T  +    R+ + +  + +    N+++     EN+     E
Sbjct: 1268 ASDEDSHIRHTNDYESEGLTLRRSNRKRKQVTYAEDGQEADDNDVSIHQIDENQGQGSLE 1327

Query: 395  KELCEIKA*DTNAKLSYE 448
            +++C +   DT + L ++
Sbjct: 1328 EDMCHMAGLDTQSNLLHQ 1345


>09_04_0501 +
           18153252-18153453,18153973-18154224,18154809-18155015,
           18155198-18157046,18157334-18157381,18158222-18158291,
           18158380-18158475,18158583-18158621,18158714-18158924,
           18159037-18159178,18159275-18159407,18159762-18159878
          Length = 1121

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 193 QGQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPSN 318
           +G VC      EG  + G R R RE+     E YS C RPS+
Sbjct: 220 KGSVCVAERRREGRGEEGRR-RSRELMEMEMEMYSRCARPSH 260


>03_03_0274 - 16089322-16089365,16089604-16089616,16090367-16090714,
            16090771-16090974,16091403-16091504,16091710-16091741,
            16092668-16093655,16094461-16094711,16095786-16097795,
            16097903-16097954
          Length = 1347

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = +3

Query: 255  PNARNVPKPRRRVL 296
            P A NVP+PRRRVL
Sbjct: 1013 PGAANVPRPRRRVL 1026


>05_06_0277 +
           26885621-26886064,26886148-26886317,26887038-26887941,
           26888544-26888575,26888862-26888928,26889116-26889173,
           26889329-26889421,26890366-26890480,26890847-26890894,
           26891012-26891057,26891161-26891231,26891865-26891870,
           26891991-26892038,26892439-26892488,26892892-26893154
          Length = 804

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +1

Query: 160 TSSALHQMYPRQGQVCP*R*GVEGTHQGGTRDRMREMYRSPEEGYSTCYRPS 315
           T+S+  +  P +    P R  V    +   RDR++E  RSP++  S    PS
Sbjct: 265 TTSSHRERSPVRRNGSPRRSPVRSIGRSPQRDRVKEQVRSPKQAQSRSRSPS 316


>07_03_0061 +
           12972944-12973054,12974509-12974536,12974701-12974870,
           12975878-12976043,12976122-12976425,12977155-12977350,
           12977464-12977622,12978311-12978371,12978904-12978967,
           12979099-12979346,12980039-12980250,12980344-12980456,
           12980547-12980623,12980710-12980873,12981493-12981564,
           12981565-12981760,12981813-12981854,12982358-12982440,
           12982534-12982671,12982942-12983124,12983216-12983263
          Length = 944

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +2

Query: 236 IREALETECAKCTEAQKKGTRRVIGHLINNESKSW 340
           + ++  T C +C E  KKGT RV   L   E + W
Sbjct: 84  VAKSARTSCRRCGEKIKKGTVRVSSKL---EGQGW 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,325
Number of Sequences: 37544
Number of extensions: 233595
Number of successful extensions: 637
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)