Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4501
         (455 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical...    31   0.53 
Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical pr...    28   2.8  
AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical ...    27   4.9  
AF077536-5|ABO16441.1|  278|Caenorhabditis elegans Hypothetical ...    27   6.5  
AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical ...    27   6.5  
Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ...    27   8.6  
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.      27   8.6  
AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine re...    27   8.6  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   8.6  

>AL132862-23|CAB60559.1|  540|Caenorhabditis elegans Hypothetical
           protein Y73F8A.30 protein.
          Length = 540

 Score = 30.7 bits (66), Expect = 0.53
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
 Frame = +2

Query: 44  PSSHSAC-LPFWPWLSPAPDDKYTDRYDNVNLDEVLSNSR--LLQPYIKCILDKDRCAPD 214
           P    AC L    W S   D  Y   +++VN+D  L N    ++   IK + +K  C P+
Sbjct: 140 PYDQQACKLTISSWTSSKSDINYEPEHESVNMDNFLPNEEWVVVSFNIKRVEEKFVCCPE 199

Query: 215 AKELKEHI 238
              L E +
Sbjct: 200 PWVLLEAV 207


>Z74035-3|CAA98481.1|  808|Caenorhabditis elegans Hypothetical
           protein F47G9.4 protein.
          Length = 808

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/73 (21%), Positives = 33/73 (45%)
 Frame = +2

Query: 140 EVLSNSRLLQPYIKCILDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLI 319
           ++L+ ++ L PY+ CIL+ +    D K         +E+ C + T  +     R++    
Sbjct: 464 QILTAAKQLVPYVSCILNMNAMI-DPKRCHPPDPAPMESICLEITGIEPNSQNRILAIEK 522

Query: 320 NNESKSWNELTAK 358
             E++  N+   K
Sbjct: 523 EEENRRLNQEAKK 535


>AL132898-4|CAC14407.3|  968|Caenorhabditis elegans Hypothetical
           protein Y59A8B.6 protein.
          Length = 968

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +2

Query: 236 IREALETECAKCTEAQKKGTRRVIGHLINNESK--SWNELTAKYDPENKFT 382
           +++A++ E AKC    +   R VIG  + +E K  +W      ++ E  FT
Sbjct: 533 LKDAVDAEMAKCPITCQAIIRNVIGLGVEDEDKRTTWLADAENFEKEEAFT 583


>AF077536-5|ABO16441.1|  278|Caenorhabditis elegans Hypothetical
           protein C16A11.9 protein.
          Length = 278

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 15/66 (22%), Positives = 31/66 (46%)
 Frame = +2

Query: 218 KELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAKYDPENKFTAKYEK 397
           K L+ + R  L  +C+   + +K     +   + N  + S+N +  K   +NKF A +  
Sbjct: 16  KHLEANKRFQLVAQCSSLVKVEKSQPLVIKKLIFNRRTISFNGVKYKLGAKNKFEAPHTL 75

Query: 398 ELCEIK 415
            + ++K
Sbjct: 76  AIKQLK 81


>AC084154-4|AAK29868.1|  767|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.7 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 281 QKKGTRRVIGHLINNESKSWNELTAKYDPEN 373
           Q++ T  V+   +N E  +WN +  KY PE+
Sbjct: 544 QERVTHIVMLGQVNEEDANWNRMFCKYFPES 574


>Z81056-2|CAB02901.2|  323|Caenorhabditis elegans Hypothetical
           protein F09F3.2 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 433 SICVLSFDFTKLLFVFGCKFIFGVVFSGQLIPGFAFV 323
           +IC+ S  F  L F FG KF+ G+  +   I    F+
Sbjct: 111 TICLSSNRFYCLYFPFGIKFLIGIPITTCAISAVLFI 147


>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
            potassium channelsprotein 2 protein.
          Length = 1564

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 14/64 (21%), Positives = 31/64 (48%)
 Frame = +2

Query: 179  KCILDKDRCAPDAKELKEHIREALETECAKCTEAQKKGTRRVIGHLINNESKSWNELTAK 358
            KC  +  +CA + +++ +   + ++  C KC +  KK  + V   +    +K+  ++  K
Sbjct: 1273 KCAKNVQKCAKNVQKMCKKCAKNVQKMCKKCAKMCKKCAKNV-QKMCKKCAKNVQKMCKK 1331

Query: 359  YDPE 370
            Y  E
Sbjct: 1332 YGLE 1335


>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
          Length = 1751

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +2

Query: 134  LDEVLSNSRLLQP-YIKCILDKDRCAPDAKELKEHIREALET----ECAKCTEAQKKGTR 298
            ++++L    +++  Y+K     D    D K+L+++     E       +   +A+K+G +
Sbjct: 1500 INKLLQKLHIIEDSYLKGPKPIDTVREDVKQLEKYRNRGAEILQQLSTSNIEDAEKEGLK 1559

Query: 299  RVIGHLINNESKSWNELTAKYDPENKFTAKYEKELCEI 412
                 ++NN       +  +   +N+ TAK ++ L E+
Sbjct: 1560 HRFVLMLNNYDDILRSIENEIRDDNELTAKNQEILAEL 1597


>AF039053-4|AAC25876.1|  304|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 24 protein.
          Length = 304

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 427 CVLSFDFTKLLFVFGCKFIFGVVFSGQLI 341
           C L +  T  + +F C FIF ++ S +LI
Sbjct: 170 CFLQYWTTYKMIIFACTFIFTILLSLKLI 198


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 19/98 (19%), Positives = 45/98 (45%), Gaps = 5/98 (5%)
 Frame = +2

Query: 134  LDEVLSNSRLLQP-YIKCILDKDRCAPDAKELKEHIREALET----ECAKCTEAQKKGTR 298
            ++++L    +++  Y+K     D    D K+L+++     E       +   +A+K+G +
Sbjct: 1500 INKLLQKLHIIEDSYLKGPKPIDTVREDVKQLEKYRNRGAEILQQLSTSNIEDAEKEGLK 1559

Query: 299  RVIGHLINNESKSWNELTAKYDPENKFTAKYEKELCEI 412
                 ++NN       +  +   +N+ TAK ++ L E+
Sbjct: 1560 HRFVLMLNNYDDILRSIENEIRDDNELTAKNQEILAEL 1597


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,831
Number of Sequences: 27780
Number of extensions: 204187
Number of successful extensions: 605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)