Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4499
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    29   0.65 
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    28   1.5  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    27   2.6  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    27   3.5  
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    26   6.1  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   6.1  
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T...    26   6.1  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   8.0  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.0  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +1

Query: 358 SCR--FLGELCHSDTSAEGCH*ICEAILGRRSR*EEEVEATPAHTGTPATE 504
           SC+  F  +LCH D   E     C+   G+R    E V  +P H G P  E
Sbjct: 707 SCKTHFCEKLCHPDGECESS---CKKECGKRRMYCEHVCQSPCHAGHPCDE 754


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 149 SALPSLIGRRLRHYSLRPQRILLTPP 72
           SAL  L  R L H  ++PQ +LL PP
Sbjct: 143 SALQFLRSRSLIHRDVKPQNLLLQPP 168


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +2

Query: 131 SVMGVLKTCSDDNVALCLKEKALRYVENVSNSRE 232
           S MG+LK   DD++ +   ++ LR+    S  ++
Sbjct: 192 SPMGILKNIQDDSMTIVTNKRILRFEPKTSRGKD 225


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -1

Query: 448 ATFFQGSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLI 329
           +TF    LR F+ T    YL+D  L+EI   V  S + L+
Sbjct: 476 STFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLV 515


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 457 EEVEATPAHTGTPATEDPVPH 519
           E   A P H G+P TE P P+
Sbjct: 527 ENPPAMPDHNGSPTTEPPKPN 547


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -2

Query: 603 IKPEAKSAALANIRPLTAAKAMIPRK 526
           +K + KS+AL  + P+T  + ++P+K
Sbjct: 468 VKQQKKSSALKIVNPVTHTEVVVPQK 493


>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
           Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 477

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 433 GSLRRFNGTLRQTYLNDKVLQEIGNSVQKSEVYLILPG 320
           G+ +RFN    +TYL +    ++      S+V L + G
Sbjct: 271 GNSKRFNNENEETYLKESGFHDLEEEASDSKVVLKIKG 308


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -1

Query: 199 QSFFLETQCDVVIGA-SFQHSHH*SEDVFVTIRCGHSAYC 83
           ++ FL+   +V +G   F      S   F+  RCG  AYC
Sbjct: 152 ENIFLDKAYNVKLGDFGFSRDSDCSRRTFMNTRCGTVAYC 191


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
 Frame = +1

Query: 538 HCL---CRRQGSYVS*SSALGFRFNTPQETA 621
           HCL     R GS +S +SA  FR+++PQ+++
Sbjct: 63  HCLDIPTVRPGSSMSRTSASSFRYSSPQKSS 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,789,720
Number of Sequences: 5004
Number of extensions: 53050
Number of successful extensions: 152
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)