Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4499
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical pr...    28   7.5  
AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical ...    28   7.5  
AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical ...    28   7.5  

>Z68316-6|CAA92682.2|  357|Caenorhabditis elegans Hypothetical
           protein K08E4.5 protein.
          Length = 357

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = -3

Query: 452 YRD---LLPRIASQIQWHPSADVSE*QSSPRNRQLRPK 348
           YRD   LLP I+S + W+P++D+S   S   N    P+
Sbjct: 283 YRDIICLLPYISSSLTWYPASDLSAFWSLHENHSESPE 320


>Z73103-9|CAJ43433.1|  719|Caenorhabditis elegans Hypothetical
           protein C08F8.2b protein.
          Length = 719

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 230 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 373
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 602 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 652


>Z73103-8|CAA97429.1|  721|Caenorhabditis elegans Hypothetical
           protein C08F8.2a protein.
          Length = 721

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +2

Query: 230 ELNLID-GVSLIGQGSPRSARSFEPLPDEPRARE--NQVDLRLLDGVADFL 373
           EL+L++    ++ Q    S R  + LPDEPR RE    +D  + +GV  F+
Sbjct: 604 ELSLLEQNYEILDQYMWLSMRFPDMLPDEPRVREASKHLDSMIQEGVESFM 654


>Z81069-8|CAB02996.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = +2

Query: 149 KTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFEPLPD--EPRA 322
           KTCSD+ +    + ++L+  E  S + E N + GV    Q    S  S +   D  E   
Sbjct: 257 KTCSDEKLDKS-RRRSLQIGEEKSETDE-NELKGVDQDNQLPNTSRFSLQNELDSLERTL 314

Query: 323 REN-QVDL--RLLDGVADFLENFVIQIRLPKGAIESAKRSLEE 442
           ++N +VD+  +LL+  ++ L NFV  I +PK   E   R  EE
Sbjct: 315 QKNIKVDVGAQLLEKYSNELTNFVANITIPKQK-EDIFRETEE 356


>Z81058-8|CAB02923.1|  442|Caenorhabditis elegans Hypothetical
           protein F11E6.8 protein.
          Length = 442

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
 Frame = -1

Query: 409 TLRQTYLNDKVLQEIGNSVQKSEVYLILPGSGLVG*RLEGPG----*SRGALTDQTD--- 251
           T+  TY    +LQ IG+ +++S   L+LP   +V   + G G      RG + D      
Sbjct: 104 TVSSTYSTQSLLQLIGSDLRQSLQGLLLPSEAVVLETIVGKGYFGNVYRGRMRDPAGRLI 163

Query: 250 --AID*VEFSRIRDIFHVSQ 197
             A+  ++  R RDI H+ +
Sbjct: 164 PVAVKTLKGERARDIAHIEK 183


>AL021448-4|CAA16278.2|  600|Caenorhabditis elegans Hypothetical
           protein Y2H9A.4 protein.
          Length = 600

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 5/103 (4%)
 Frame = +2

Query: 149 KTCSDDNVALCLKEKALRYVENVSNSRELNLIDGVSLIGQGSPRSARSFEPLPD--EPRA 322
           KTCSD+ +    + ++L+  E  S + E N + GV    Q    S  S +   D  E   
Sbjct: 257 KTCSDEKLDKS-RRRSLQIGEEKSETDE-NELKGVDQDNQLPNTSRFSLQNELDSLERTL 314

Query: 323 REN-QVDL--RLLDGVADFLENFVIQIRLPKGAIESAKRSLEE 442
           ++N +VD+  +LL+  ++ L NFV  I +PK   E   R  EE
Sbjct: 315 QKNIKVDVGAQLLEKYSNELTNFVANITIPKQK-EDIFRETEE 356


>AF016688-6|AAB66074.2|  274|Caenorhabditis elegans Hypothetical
           protein F18A12.2 protein.
          Length = 274

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +2

Query: 179 CLKEKALRYVENVSNSR----ELNLIDGVSLIGQGSPRSARSFEPLPDEPRARENQ 334
           CL +  L YV +  +++     + +    ++I QGSP +++  EP P +P    N+
Sbjct: 96  CLFQACLAYVHSSKSAKMSQPSVIIPQQNAIIPQGSPEASQQREPTPPKPEEPPNE 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,848,709
Number of Sequences: 27780
Number of extensions: 321677
Number of successful extensions: 990
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 987
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)