Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4499
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    23   2.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   5.0  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.6  

>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 481 HTGTPATEDPVPHPRLPRNHCLCRRQGSY 567
           H G   ++  +P+PR P  + +  R  +Y
Sbjct: 65  HYGAAGSQQDMPYPRFPPYNRMDMRNATY 93


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +2

Query: 635 HHESYEVVAHPHHEEHFSHST 697
           HH S+    H  H    +HS+
Sbjct: 432 HHHSHAATPHHQHSTPLAHSS 452


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 481 HTGTPATEDPVPHPRLPRNHCL 546
           HTG    E P  H R  R+H L
Sbjct: 4   HTGEKPFECPECHKRFTRDHHL 25


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 493  PATEDPVPHPRLPRNH 540
            P +  P P P  PRNH
Sbjct: 1852 PVSGSPEPPPPPPRNH 1867


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,479
Number of Sequences: 438
Number of extensions: 4244
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)