Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4492
         (702 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    27   2.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   4.5  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    26   4.5  
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    26   4.5  

>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -3

Query: 184 KYGYYHTSSKNY*FAILREYSVREISRFVLVSSTFYVI 71
           +YGY+H S   Y +A    Y++ EI+   L+    ++I
Sbjct: 492 EYGYFHNSFVYYLYAAQMGYALAEINAAYLMDENKFLI 529


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 579 SYLIPRVIENIPHISSSSFRYLIIDGVVVL 668
           S+ IP++I+N+   +S SF +  I G  VL
Sbjct: 503 SFWIPQIIQNVKQGTSRSFTWTYILGASVL 532


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -1

Query: 243 PVNGLSMSDDTQWMGENFLQ--SMVTIILVAKTINLQSYENILFAKSV 106
           P+   +  D+ QW     L   +  T++++    N +SY+NI F +S+
Sbjct: 11  PLKRTAAYDNVQWNQNRILTFGTRYTVLIIVN--NYESYQNIQFGESI 56


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 686 VPGPPLENYNAIYYQITETTT-RDVWNILDNSRDEV*TIKAF*RWH 552
           VPG  +   N     ++ TT+  + W+ LD+  D + + +AF  W+
Sbjct: 367 VPGSGIAKVNRAVCMLSNTTSIAEAWSRLDHKFDLMYSKRAFVHWY 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,958,828
Number of Sequences: 5004
Number of extensions: 61019
Number of successful extensions: 124
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)