Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4492
         (702 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical pr...    35   0.065
Z35663-3|CAA84723.1|  480|Caenorhabditis elegans Hypothetical pr...    28   7.4  

>U70848-3|AAB09111.2|  399|Caenorhabditis elegans Hypothetical
           protein C43G2.4 protein.
          Length = 399

 Score = 34.7 bits (76), Expect = 0.065
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +2

Query: 188 RKFSPIHWVSSLIDKPFTGGRTSCASALVGTTTLPFYTV 304
           R  +P+HWV  LID   T GR S     V T  L  Y +
Sbjct: 179 RWLTPLHWVQQLIDAEITAGRGSVNYVSVATNELKAYRI 217


>Z35663-3|CAA84723.1|  480|Caenorhabditis elegans Hypothetical
           protein T04A8.5 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
 Frame = +3

Query: 438 STLRTLKTL*NSQFACSASLQVIRSPFRFD*FRLLTDCVPSLKRFYSSY-LIPRVIENIP 614
           +T+RTL  +     A    L++   P +F  F  +   +P+ K   ++   IP + +   
Sbjct: 378 NTMRTLVKMLRDAGAKEVHLRIASPPVKFPCFMGIN--IPTTKELIAAEKTIPEICQ--- 432

Query: 615 HISSSSFRYLIIDGVV 662
            + + S RYL +DG+V
Sbjct: 433 FVGADSVRYLSVDGLV 448


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,604,228
Number of Sequences: 27780
Number of extensions: 349635
Number of successful extensions: 717
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)