Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4490
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 25 4.3
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 24 7.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 9.8
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 9.8
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 9.8
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 9.8
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 9.8
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 9.8
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 24 9.8
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 24 9.8
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 9.8
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 9.8
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 9.8
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 9.8
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 9.8
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 25.0 bits (52), Expect = 4.3
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +2
Query: 35 NTFNFDTGNISSTVHPSNCKLYPKGFR-ISIAS 130
+T N +T +I+S + + YP GF ISI S
Sbjct: 925 STSNAETSSITSVISVNEALQYPSGFALISIVS 957
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +3
Query: 48 LTLATFHRQFIRAIASYIPKDLEFLSLANDLFNLIVTTGSETDHKCLSCIFVL 206
L L+T + F+R++ Y + + +F+LIV E D L I L
Sbjct: 57 LNLSTHYVNFLRSVTPYSQSLPQIVYHQKTIFDLIVQYAREGDSLSLQPILEL 109
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 23.8 bits (49), Expect = 9.8
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = -2
Query: 353 VTY*DSKKIKCSRCRRH*H*SAPDKTKL*SEQKKTTFSKYIIINK 219
V Y S + +C RCRR + D L ++ T F K ++ N+
Sbjct: 307 VNYCKSIRFRCFRCRRVEYFFYLDSNPLSIQRTITHFIKKLVCNE 351
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = +1
Query: 190 LVFLSYNYNVLFMIMYFEKVVFFCS 264
L F Y Y V+ + +FFCS
Sbjct: 136 LPFTMYKYTVILTALEMPLAIFFCS 160
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 9.8
Identities = 5/17 (29%), Positives = 14/17 (82%)
Frame = +1
Query: 52 HWQHFIDSSSEQLQVIS 102
HW+H+++S+ E ++++
Sbjct: 765 HWRHYLESTIEPFKILT 781
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,497,157
Number of Sequences: 5004
Number of extensions: 26535
Number of successful extensions: 71
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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