Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4490
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    25   0.31 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    23   0.96 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   3.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    20   9.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    20   9.0  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +1

Query: 190 LVFLSYNYNVLFMIMYFEKVVFFCSD 267
           L+F S+ +NVL M++Y+++     +D
Sbjct: 158 LIFESWTHNVLDMVLYWDQEPIILAD 183


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 35  NTFNFDTGNISSTVHPSNCKLYPKGFRISI 124
           N +N++  N     +  N KLY K + I+I
Sbjct: 320 NNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +1

Query: 181 NACLVFLSYNYNVLFMIMYFEK 246
           N  +   SY Y VL ++MY+++
Sbjct: 174 NCTVEIESYGYTVLDVVMYWKE 195


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = -3

Query: 268 NPNKKRQLFQNTL 230
           NPN  + +F+NT+
Sbjct: 78  NPNAMKTIFKNTI 90


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.2 bits (40), Expect = 9.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 208 NYNVLFMIMYFEKVVFFCSDYSL 276
           ++N+ ++I+YF  V    + YSL
Sbjct: 2   SFNIWWLILYFSIVCQAKAHYSL 24


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,567
Number of Sequences: 438
Number of extensions: 1876
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)