Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4489
         (616 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    83   2e-17
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    41   2e-04
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S...    28   0.93 
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   5.0  
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    25   6.6  
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    25   6.6  
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom...    25   6.6  
SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces p...    25   8.7  

>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 83.4 bits (197), Expect = 2e-17
 Identities = 42/77 (54%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
 Frame = +1

Query: 346 ASPPLLVMSEHAPRP-LLPPVRHQDMPKKCMVIDLDETLVHSSFKPINNADFVVPVEIDG 522
           A PPL  +  +     LLPP+  +D  KKC+++DLDETLVHSSFK I  ADFVV +EIDG
Sbjct: 130 ADPPLPEVKRYGEGNWLLPPIAKEDEGKKCLILDLDETLVHSSFKYIEPADFVVSIEIDG 189

Query: 523 AVH*VYVLKKAHVDKFL 573
             H V V+K+  VD+FL
Sbjct: 190 LQHDVRVVKRPGVDEFL 206


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
 Frame = +1

Query: 358 LLVMSEHAPRPLLPPVRHQDMPKKCMVIDLDETLVHS-SFKPINNADFVVPVEIDGAVH* 534
           + + ++  PRPLL    +  +P+K +V+DLDETL+HS S      +   + V + G  H 
Sbjct: 285 ITLCADKIPRPLL----NSKLPRKTLVLDLDETLIHSVSRGSRTTSGQPIEVHVPGE-HP 339

Query: 535 V--YVLKKAHVDKFL 573
           +  Y+ K+ H+D FL
Sbjct: 340 ILYYIHKRPHLDYFL 354


>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1206

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 178  VQHNEGDGTPVSGSTPLGGKKSSGTGGFLR 267
            + H E DG P++  TP  G+  +G G FLR
Sbjct: 930  ISHTEIDGIPMA-LTPFQGRMLAGVGRFLR 958


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 230 PKGVDPETGVPSPSLCCTPGDEPLSG 153
           P  VDP   + SPSL  + G EP+ G
Sbjct: 52  PNSVDPSASITSPSL--SSGPEPVYG 75


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 493 DFVVPVEIDGAVH*VYVLKKAHVDKFLP 576
           DF +P E D ++H + +L K H+    P
Sbjct: 40  DFKLPKEYDVSIHALTILMKRHLSNMEP 67


>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +1

Query: 358 LLVMSEHAPRPLLPPVRHQDMPKKC-MVIDLDETLVHSSFKP 480
           L V  E A R     V+     K+  +++DLD+T++H++  P
Sbjct: 141 LTVSLEEASRLESENVKRLRQEKRLSLIVDLDQTIIHATVDP 182


>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 564

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 72  PKTNV*MDASSIITQVSRG*RTIKQLWTR*RF 167
           P+T V M A  II    RG R  + +W R  F
Sbjct: 234 PRTIVYMKACIIIYAFDRGCRLFRSIWNRSNF 265


>SPAPYUG7.03c |mid2||anillin homologue Mid2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 704

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 325 TNSIDGRASPPLLVMSEHAPRPLLPPVRHQDMPKKCMVIDLDETLVHS 468
           T+SI    SP   V+ E+AP PLLP V     P+   V+   + L  +
Sbjct: 292 TSSITSLDSPH--VLDENAPIPLLPKVVSLPDPRFTNVLSAFDALTRT 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,531
Number of Sequences: 5004
Number of extensions: 60053
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)