Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4489
         (616 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                25   0.59 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   2.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   7.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   7.2  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.0 bits (52), Expect = 0.59
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +1

Query: 121 HGDDEQLNNYGPDRGSSPGVQHNEGDGTPVSG 216
           H      + Y P RGSSP  QH      P  G
Sbjct: 317 HPHQHHPSQYHPHRGSSPHHQHGNHTMGPTMG 348


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 605 NRIGKARRPAGRN 567
           NR+G  RRP+ RN
Sbjct: 396 NRVGSTRRPSRRN 408


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 76  FGLNTNGDRVSVKF*HHKTIP 14
           F LNT+GD   ++   HK  P
Sbjct: 124 FSLNTDGDIAGLRKKKHKVNP 144


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = +1

Query: 28  GVKILQKLCRRLY*GQKQMYKW 93
           G+KI++++   +Y  Q   Y W
Sbjct: 353 GIKIIKQISSNIYERQNNEYIW 374


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,021
Number of Sequences: 438
Number of extensions: 4439
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)