Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4488
         (522 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine rece...    29   1.5  
Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical pr...    27   6.2  
Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical...    27   8.1  

>U23517-5|AAB93339.2|  425|Caenorhabditis elegans Serpentine
           receptor, class o (opsin)protein 1 protein.
          Length = 425

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 197 HSSRVPLVCNLSTSFPWFVYDFLCLNSIRLAEHRFN 90
           H  +V L C L +  P+F Y  +CLN ++   H+ +
Sbjct: 283 HVGKVGLGCLLVSVVPFFAYSIVCLNPMKSNFHQIH 318


>Z81592-1|CAB04725.1|  695|Caenorhabditis elegans Hypothetical
           protein T16G1.1 protein.
          Length = 695

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 482 VVSIEEHSEVCKQILFKGSAARGSASRVNDKNSENEN 372
           V  I E   +CK + FK +A  G  +  N+ N+ N N
Sbjct: 464 VPPIPEPKPLCKGLKFKKTANGGGGNNNNNNNNNNRN 500


>U64842-1|AAB37083.2|  710|Caenorhabditis elegans Hypothetical
           protein F25B4.5 protein.
          Length = 710

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 113 EYYLNIGNRKRTKGRRSRDCRLKERERNESRQPNLR 220
           +YY +  +RKR    R RD R ++ +R+  R+   R
Sbjct: 13  DYYRSSSSRKREDSHRRRDDRHRDSDRDRDRRRRSR 48


>U00055-5|AAL06044.4| 1182|Caenorhabditis elegans Hypothetical
           protein R02F2.2 protein.
          Length = 1182

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +2

Query: 104 RRVEYYLNIGNRKRTKGRRSRDCRLKERERNESR---QPNLRRAD 229
           RR +  LN  N +  +  R R      RER+ESR   Q NLR+ +
Sbjct: 44  RRSDANLNFFNERERQRERRRSMVRASRERSESRRASQQNLRKTN 88


>Z49911-11|CAA90135.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 134 NRKRTKGR-RSRDCRLKERERNESRQPNLRR 223
           +RKR + R RS+D R ++++R+ SR P  RR
Sbjct: 360 DRKRERSRSRSKD-RKRDKKRSRSRSPEKRR 389


>Z36948-6|CAA85414.2|  452|Caenorhabditis elegans Hypothetical
           protein D2089.1a protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 14/31 (45%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = +2

Query: 134 NRKRTKGR-RSRDCRLKERERNESRQPNLRR 223
           +RKR + R RS+D R ++++R+ SR P  RR
Sbjct: 360 DRKRERSRSRSKD-RKRDKKRSRSRSPEKRR 389


>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
            protein Y47G6A.29 protein.
          Length = 2460

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -2

Query: 209  VVSIHSSRVPLVCNLSTSFPWFVYDFLCLNSIRLAEHRFNVQPPIANE*NR 57
            V+S H +  P    L T F WF Y     N+     HR +++P    E  R
Sbjct: 1651 VLSAHQASCPSCILLKTLFRWFAY---AGNAPGAINHRLDIRPEFEIEETR 1698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,756,716
Number of Sequences: 27780
Number of extensions: 163990
Number of successful extensions: 432
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)