Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4487
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   5.2  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    26   6.8  
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    25   9.0  

>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 16/52 (30%), Positives = 29/52 (55%)
 Frame = -1

Query: 165 TTQLAHNASSRNMISTASPTQA*V*CQSTSTPRLSAHK*LTNTGAKSSTIYT 10
           T+Q + + S  +  +T + TQ  V  QS S+P++ +   +T +GA    +YT
Sbjct: 391 TSQASAHPSIHSQSATFNNTQD-VNRQSVSSPKVVSSSSVTGSGASGRKVYT 441


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 107  VGDAVEIIFLDDALCASCVVSLVILERNTSCCSHAR 214
            +GD  EI +  D    +C  S+V   R TS  +HA+
Sbjct: 1293 LGDGGEIFYACDQRGENCETSVVCSLRLTSAAAHAK 1328


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 655 FKNAVIKQFFNQSS*KFPYNHFNISRRYI 569
           F NA I+Q FN  + +FP  H+ I+R+ +
Sbjct: 185 FLNANIEQLFNTMNIEFP-PHYRIARKSV 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,031,167
Number of Sequences: 5004
Number of extensions: 59490
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)