Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4484
         (665 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.06c |||glutamate-cysteine ligase regulatory subunit |Sch...    26   5.6  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   7.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   9.8  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   9.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   9.8  

>SPCC737.06c |||glutamate-cysteine ligase regulatory subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 287

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/22 (36%), Positives = 17/22 (77%)
 Frame = +1

Query: 559 LSQHRKSGVWDKARVKYNMTFV 624
           ++++ KSG+W+ +R+K N+  V
Sbjct: 16  VTKNLKSGIWNASRIKSNLELV 37


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +3

Query: 309 HFYEIANRIETIKQYPEADTPVSPCYLTRINC*IHMQINHRTRHKNER 452
           ++Y++ N  ET+ +Y   D P S      +N    M++ HR R++ ++
Sbjct: 255 NWYQVTNPTETLSEYSVEDIPES-----ELN---EMKLRHRKRYETKK 294


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 414  MQINHRTRHKNERELHLVMVSASRRYTLKAVHAKV 518
            M ++HR  HK   + HL  V     + +  VH  V
Sbjct: 1681 MSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVHGSV 1715


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -3

Query: 657  KKTGNGRYFKD-NKRHVVL-NSCLV 589
            K   NGRYFKD  K H+++ N  LV
Sbjct: 2964 KHLDNGRYFKDFYKAHIIIENKVLV 2988


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +3

Query: 414  MQINHRTRHKNERELHLVMVSASRRYTLKAVHAKV 518
            M ++HR  HK   + HL  V     + +  VH  V
Sbjct: 1681 MSLSHRRGHKRTYDEHLNNVQQGVNHDMNRVHGSV 1715


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,807,406
Number of Sequences: 5004
Number of extensions: 57011
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)