Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4484
         (665 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1052 + 23598547-23600181                                         29   3.3  

>07_03_1052 + 23598547-23600181
          Length = 544

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/89 (23%), Positives = 35/89 (39%)
 Frame = +3

Query: 336 ETIKQYPEADTPVSPCYLTRINC*IHMQINHRTRHKNERELHLVMVSASRRYTLKAVHAK 515
           + +KQ+  +D P  PC+  R     H+  +H     +  +      +   +YTL +    
Sbjct: 19  QNLKQFQYSDNPQHPCHPYRAPSDTHVVPHHYGLKSHSPDAGYESQATPNKYTLDSSEGA 78

Query: 516 VQDAL*RLDYPRCNAFTTQKKRSLGQGTS 602
                 R D P   +FTT+    L Q  S
Sbjct: 79  ---GCMRHDSPSSQSFTTRSGSPLSQEDS 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,387
Number of Sequences: 37544
Number of extensions: 349690
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)