Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-4476
(768 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1399.04c |||uracil phosphoribosyltransferase |Schizosaccharo... 28 1.3
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 27 2.2
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 27 2.2
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 27 3.0
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 27 3.9
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 26 6.8
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 25 9.0
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 25 9.0
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr... 25 9.0
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 9.0
>SPAC1399.04c |||uracil phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 220
Score = 28.3 bits (60), Expect = 1.3
Identities = 24/86 (27%), Positives = 39/86 (45%)
Frame = +3
Query: 423 GSAAAKQALVSVGDVLLEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKL 602
G AAA V VG +L++ D E++ + DR+ L + P L +S +
Sbjct: 95 GLAAACNYSVPVGKLLVQRDETTFEAKLMFCKLPKDAQDRLVLLLDPLLATGNSVILAIQ 154
Query: 603 TCYVRTLFDYNPIQDTLIPCKEIGLT 680
T + + + N + LI C E G+T
Sbjct: 155 TLINKGIPEENIVFVNLIACNE-GIT 179
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/47 (42%), Positives = 25/47 (53%)
Frame = -3
Query: 334 TTFTVSIGISPLPSGLSFENSIRSGNSFGINLSSIPDPLSNQILPIW 194
TT SI P PSGLS NS + +SF IP + Q+LPI+
Sbjct: 337 TTSIPSINNQPFPSGLSASNSNFASSSF------IPQSVP-QLLPIY 376
>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/67 (29%), Positives = 31/67 (46%)
Frame = +3
Query: 468 LLEVDGVHIESEEQLKEAVAKPNDRVTLKVGPNLKEKSSQLTNKLTCYVRTLFDYNPIQD 647
L V+G+ E + L A+ + ++L PN K+K L C+ R +F+ D
Sbjct: 176 LQSVEGLQREQRKILFNAIDILSHEISLIASPNSKKK----YKSLYCW-RKIFEIYMDSD 230
Query: 648 TLIPCKE 668
I CKE
Sbjct: 231 IFISCKE 237
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 24 CADSEEDLLVKPVSLGNVNIIRSLSEY--RGNNIRTIEQAELAIIVSRAH 167
C D+E+++ V +S + + E RGN+ RT+ E + SR+H
Sbjct: 208 CEDAEQNVSVPGLSYFTPTNLEEVMEIIIRGNSNRTMSPTEANAVSSRSH 257
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 26.6 bits (56), Expect = 3.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 682 FKKGDILQISDRKDPNWWQAS 744
FKKGDI+ + + +WW+ S
Sbjct: 236 FKKGDIILVLESVYKDWWKGS 256
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 25.8 bits (54), Expect = 6.8
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = -2
Query: 362 RLSWYF-SKTYNFYCFYRHIAVTLGTL 285
R WY S + NF+ FY H+ +G +
Sbjct: 255 RFLWYSTSYSLNFHLFYHHLTTMMGQM 281
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 9.0
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +3
Query: 174 ALIEAHDQ--IGKIWLERGSGIDDKLIPNEFPDLIEFSKESPE 296
AL E H+ IGKI + S + DK FP LI F + E
Sbjct: 66 ALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSE 108
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.4 bits (53), Expect = 9.0
Identities = 8/26 (30%), Positives = 13/26 (50%)
Frame = +1
Query: 682 FKKGDILQISDRKDPNWWQASHVERP 759
F+KGD L + ++ WW + P
Sbjct: 887 FQKGDTLMVLRTQEDGWWDGEIINVP 912
>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.4 bits (53), Expect = 9.0
Identities = 16/64 (25%), Positives = 32/64 (50%)
Frame = -3
Query: 289 LSFENSIRSGNSFGINLSSIPDPLSNQILPIWS*ASINALKCALDTMIASSACSIVRILF 110
L+ +N RS ++ + P S ++P++ ++ L C L + +AS C++V F
Sbjct: 181 LTHKNLCRSIHNITTSYRLDPRDTSYVVMPLFH---VHGLLCGLLSTLASGGCAVVPPKF 237
Query: 109 PRYS 98
+S
Sbjct: 238 SAHS 241
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 25.4 bits (53), Expect = 9.0
Identities = 7/20 (35%), Positives = 14/20 (70%)
Frame = +1
Query: 691 GDILQISDRKDPNWWQASHV 750
GD++Q+S++ P+W+ V
Sbjct: 303 GDVIQVSEQLGPDWYMGEKV 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,442
Number of Sequences: 5004
Number of extensions: 63664
Number of successful extensions: 177
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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