Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-4475
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar...    29   0.94 
SPCC1795.08c |||histone acetyltransferase complex subunit |Schiz...    25   8.8  
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    25   8.8  

>SPAC823.11 |||sphingosine-1-phosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = -2

Query: 435 VSFDLILPIFFFEGNIFFKKNIFEAF----NYQGCLSIY 331
           V F L LPIFF+ G I++  +I + F     + GC+  Y
Sbjct: 79  VFFMLALPIFFWSGCIYYTLDITQLFAAGVYFSGCIKDY 117


>SPCC1795.08c |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 985

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 123 TSRQNVPNKLSIHKNIDI 176
           TS+  +P+  +IHKNID+
Sbjct: 139 TSKSPIPSPETIHKNIDV 156


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 429 FDLILPIFFFEGNIFFKKNIFEAFNYQGCLSI 334
           FD  + +F  EG ++  +  F+AFN  G  S+
Sbjct: 7   FDRTITVFSPEGRLYQVEYAFKAFNNAGITSV 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,490
Number of Sequences: 5004
Number of extensions: 57072
Number of successful extensions: 127
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)